Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1898 ATGGCATCACCATCGGAACTAAGCCTTGATTGCAAGCCCCACAGCTATTCCATGCTGCTGAAATCATTTGGAGATCAGCAGAGTGATCATCATCAGAATCAGAATCAGGCCTACAAGCTTGAAGAGTTCCTTTCTCGACTTGAGGAAGAACGCCTCAAGATTGATGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTCCTCACCAACGCCATGGAGGCTTCAAGGCTGCAACTTCAGGCCTTCAGAGTGAACCAAGCCACAAGGCCAGTTCTGGAAGAATTCATACCCATAAAGCATTCAACCTCGGAGAGCTCCGAGAAGGCACCAACAAGCATGTCTGACAAGGCAAATTGGATGACGTCTGCTCAACTATGGAGCCAAGCAAGCGAAGGAACGAAACAACAGCAACAACAACCAACAATCACAACCCCAAAAGAACCTCATCATCATGATATTGGCTTCAATGTAAGCCCCAAGCTAGTTCTCGAAAACAAACACAGGAATGGTGGTGGAGGGGCCTTTCTTCCATTCTCTAAAGAAAGAAGCACCTCTTGCCAAGGCTCTTCACTGAGGCTACCTGAGCTGGCACTTGCATCTGCTGAGAAAGAAATTATGGATGATAAGAAATGTGGGGAGGCAGAGAATAAGGTGCACAAGAGGGAGAATTCTAGTGGCAACGATGGAGTGGTGGTTGATCAAGGAAAAGGGACTAGTCCTGTTGCATCTCATGCACAAACAAGCACTGCCACCACATCCACCACCACCACCACTACTACTCAAACTCATAGGAAAGCAAGAAGGTGCTGGTCACCGGATTTGCACCGTCGATTTGTTAATGCCCTTCAAATGCTTGGTGGATCTCAAGTGGCCACCCCAAAACAGATTAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTGAAAAGCCATCTGCAGAAATATAGGCTTCACACCAGAAGACCAAGCCCAAACCCACCAGCAGGTGCACCAGCTCCACAGCTTGTGGTCCTAGGAGGAATCTGGGTCCCACCGGAGTACGCGACGGCAGCTGCAGCAGCCGCCCACTCCGGCGCCCCTGCCCTCTACGGTGCTCACCACCCTGCCACCCATGCGCCACCGCACTACTGTGCAGCCACCCCAGTGCCCCAAGAGTTCTATACTGCCGCACCACCGCAGCCGCTGCTTCCTCCACCGCCGCCGCCACACCATAACAGTTCCCTGCACCACCACCTGCACGTGTACAAGGCAGCGGGGCATGGCCAAAGCTCGCCGGAATCGGAGGTGGGAGGAGGTGGGGAGCGGTCGGAGAGCATAGAGGATGGGAAGTCGGAGAGTAGCAGCTGGAAGGGAGAAAGCGAAGGTGAGAGGAAAGGGCTGAATGAAGAGAGCAATGGCAGTGACATCACTCTCAAATTCTAG 1428 0.5238 MASPSELSLDCKPHSYSMLLKSFGDQQSDHHQNQNQAYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRLQLQAFRVNQATRPVLEEFIPIKHSTSESSEKAPTSMSDKANWMTSAQLWSQASEGTKQQQQQPTITTPKEPHHHDIGFNVSPKLVLENKHRNGGGGAFLPFSKERSTSCQGSSLRLPELALASAEKEIMDDKKCGEAENKVHKRENSSGNDGVVVDQGKGTSPVASHAQTSTATTSTTTTTTTQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPNPPAGAPAPQLVVLGGIWVPPEYATAAAAAAHSGAPALYGAHHPATHAPPHYCAATPVPQEFYTAAPPQPLLPPPPPPHHNSSLHHHLHVYKAAGHGQSSPESEVGGGGERSESIEDGKSESSSWKGESEGERKGLNEESNGSDITLKF* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1898 475 MobiDBLite consensus disorder prediction 390 475 - -
Dod05g1898 475 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 265 320 IPR006447 GO:0003677
Dod05g1898 475 Coils Coil 40 60 - -
Dod05g1898 475 Gene3D - 264 322 - -
Dod05g1898 475 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 475 - -
Dod05g1898 475 SUPERFAMILY Homeodomain-like 262 323 IPR009057 -
Dod05g1898 475 MobiDBLite consensus disorder prediction 129 144 - -
Dod05g1898 475 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 475 IPR044787 GO:0003700|GO:0006355
Dod05g1898 475 MobiDBLite consensus disorder prediction 239 265 - -
Dod05g1898 475 MobiDBLite consensus disorder prediction 213 267 - -
Dod05g1898 475 MobiDBLite consensus disorder prediction 129 152 - -
Dod05g1898 475 MobiDBLite consensus disorder prediction 435 465 - -
Dod05g1898 475 MobiDBLite consensus disorder prediction 390 407 - -
Dod05g1898 475 Pfam Myb-like DNA-binding domain 267 318 IPR001005 -
Dod05g1898 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 262 322 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1898 Dod-Chr5 44607946 44611307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1898 1 475 G2-like Transcription Factor Family AT2G03500 47.809 6.22e-124 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dod05g1898 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1898 - - gmx:100807925 577.015