Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1894 ATGCATTATCCTCGTTTCTTGGTTCCCTTCTGCAAATCATTTCCAAGATTTGTTTTTTCTTTTGGTTATTTTCGATTTGGATTGCTTTACATGTTAGATGTGTACATCTACGACTATTTCTTGAAGAAACAGTTGCATGCTTCTGCAAGGGCATTTCAGGCTGAAAGAAACGTCTCAACGGATCCTGTTGCTATAGACGCACCAAATGGTTTTCTCTTTGAGTGGTGGTCTGTCTTCTGGGACATATATATTGCAAGGACAGATCAGAAGCACTCTGAAGCAGCAGCATCTTATACTAAGAGCCAACAAGACAAGGCTCGAGAAAGGCAGAAGCAACTGGAGCAAGAGCTTCAGAATCCAAACCAGAATCAACAAATGCAAATGCAGCTGTTAATGCAGCAGAGGCATGCTCAGCAGCAACAACGTAGTGGTCGAGCTCCACTTGTTAGTGGCAGTGCTAGTGGTCCTATTAGCAATGATCATTTGATGAGGCAGAATCGTGAAACTTCTAATGCTATGGCAACAAAGATGTATGAGGACAGTTTGAAGCTTCCACTCCAGAGGAATGCTTTGGATGATGTTTCCATCAAGCAAAAGGGAGTTGGTAATGTTGGTCAGTTTCTGGACCCAAATCATGCCTCATTGTTGAAAGCAGTAGCAGCAACAACTGGTGGACAGGCTACAGGGCAAACATTACTCAGTGCACCTAGCATTCTACAGGGCAATCTTCAACAAGTTCAAGATCAGAATCCGCAACTTCGAGGGTCTATGCAAGACTTAAGGAGTGAGATGAATCCATTGATTAGATCTCAAGCTGGTTTTTCAGAAGGATCCTTTGTTGGTATTCATGGTACAAATCAAGATGGTAGCAATTTGACTCTGAAAGGATGGCCTTTAGCAGGACTGGGTCTGGATCAGCTTCGCTCAGAACTTCACCAGCGGAATAATTTGATGCACTCTCCGCATTCTGTCAATCAACTTTCACTGCAGCAGCAACTTATACTTCAGGCGCAACATAATTTAGCTCCTCCTTCTGTCAGTGATTTTGAGAGCAGAAGACTCAGAGTGCTTCTTAATAATCAAAATATGGGTCTTGTGAAAGATGGACGATCAAATTCTGGAGGCGATTTAATTCCAAATATTTCACCAGCACAAGTTGCTTCTCCTATGTTGCCTCATCCAGACTCGGATATGCTCCTTAAGCAAGAAGTTCAAAAGAGTGGTCAGCAGCTTCAACAATATTTACAGCATCCTCTTTCAAGCCAGCAGACTGAGAGTCTCCAGCAGAAAGAAAAAGTTGGCTCCGGCAGCAATACAGTAGATGGCAGCATGTCCAGTACCTTACGAGTAAATGACCAGGTTTCCAAAAGTCAAATTGGACGAAAGCGAAAGCAGGCATCATCTGCAGGTCCTGCCAACAGCTCTGGAACTGCAAACACCACAGGACCATCTAACAGTTCACCTTCAACACCATCTACGCAAACACCAGGAGATGTGCTGACTGTGCAACAGAATGTTCCTTCCTCTAAGTCATTGCTTATGTTTGGTGCTGATGGTTTGGGCTCACTTACACCAGCACAGAATCAGTTGGATGATATGGACCGCCTTCTGGGAGATGGATCTTTGGGTGACAATGTTGTGTCATTGTTGTCTCCTGAGCATGGCCCTAGAGATAGAGTTGGCAAAGAATTCTCTTTCAAGGAAACTAAGCATATTATGGCAAGCACACATAAAGTTGAGTGTTGTCACTTCTCATCAGATGGAAAACTCTTTGCTACTGGTGGCCATGACAAAAAGGCTTCTTTGTGGTGCACTGAAACATTTAACTTGAAGTCTACACTAGAAGAGCACACTCAATGGATAACTGATGTTCGATTTAGTCCAAGCACGTCGCTTGTTGCTACATCCTCAGCTGACAAAACTGTTAGGGTCTGGGATGTTGATAATCCTGGTTATTCTCTTCGAACATTCACGGGACATGCCTCAACTGTGATGTCACTAGACTTTCACCCTAGTAAAGACGACCTTATTTTCTCATGTGACAGTAGCGAGATAAGATACTGGAGTACTAAAAATGGTAGTTGTGCTGGAGTTTTCAAGGGTGGTGTAACTCAGATGAGATTTCAACCTTGTTTGGGAAGGCTTCTTGCTGCAGCGGTAGATAATCTCATATCCATTATTGATGTAGAAACCCTTGGTTGCACTCTTAAATTACAGGGCCATAATAACCCCGTCCGTTCTGTGTGCTGGAACTCTTCTGGTAAATATCTGGCATCTCTTAGTGATGATCTGGTTAAAGTTTGGACAGTCGGATCCAGTAGCAAAGGGGAATGCATTCATGAGTTGAATGCATCTGGAAACAAATTCAACACCTGTGCCTTCCATCCCTTCTATCCTCTGGTGATCATCGGCTGCAATGAAACTCTTGAGCTGTGGGACTTTGGTGAGAACAAGACAATGACTCTGCGTGCACACCACAAGCTTGTATCTTCCTTGGCAGTATCAAATGTTAGTGGCTTGGTGGCATCAGCTAGTCATGACAAGCATTTCAAGATTTGGAAGTGA 2565 0.4355 MHYPRFLVPFCKSFPRFVFSFGYFRFGLLYMLDVYIYDYFLKKQLHASARAFQAERNVSTDPVAIDAPNGFLFEWWSVFWDIYIARTDQKHSEAAASYTKSQQDKARERQKQLEQELQNPNQNQQMQMQLLMQQRHAQQQQRSGRAPLVSGSASGPISNDHLMRQNRETSNAMATKMYEDSLKLPLQRNALDDVSIKQKGVGNVGQFLDPNHASLLKAVAATTGGQATGQTLLSAPSILQGNLQQVQDQNPQLRGSMQDLRSEMNPLIRSQAGFSEGSFVGIHGTNQDGSNLTLKGWPLAGLGLDQLRSELHQRNNLMHSPHSVNQLSLQQQLILQAQHNLAPPSVSDFESRRLRVLLNNQNMGLVKDGRSNSGGDLIPNISPAQVASPMLPHPDSDMLLKQEVQKSGQQLQQYLQHPLSSQQTESLQQKEKVGSGSNTVDGSMSSTLRVNDQVSKSQIGRKRKQASSAGPANSSGTANTTGPSNSSPSTPSTQTPGDVLTVQQNVPSSKSLLMFGADGLGSLTPAQNQLDDMDRLLGDGSLGDNVVSLLSPEHGPRDRVGKEFSFKETKHIMASTHKVECCHFSSDGKLFATGGHDKKASLWCTETFNLKSTLEEHTQWITDVRFSPSTSLVATSSADKTVRVWDVDNPGYSLRTFTGHASTVMSLDFHPSKDDLIFSCDSSEIRYWSTKNGSCAGVFKGGVTQMRFQPCLGRLLAAAVDNLISIIDVETLGCTLKLQGHNNPVRSVCWNSSGKYLASLSDDLVKVWTVGSSSKGECIHELNASGNKFNTCAFHPFYPLVIIGCNETLELWDFGENKTMTLRAHHKLVSSLAVSNVSGLVASASHDKHFKIWK* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1894 854 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 822 854 - -
Dod05g1894 854 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 614 649 - -
Dod05g1894 854 ProSiteProfiles Trp-Asp (WD) repeats profile. 614 649 IPR001680 GO:0005515
Dod05g1894 854 SMART WD40_4 815 854 IPR001680 GO:0005515
Dod05g1894 854 SMART WD40_4 565 604 IPR001680 GO:0005515
Dod05g1894 854 SMART WD40_4 692 728 IPR001680 GO:0005515
Dod05g1894 854 SMART WD40_4 731 769 IPR001680 GO:0005515
Dod05g1894 854 SMART WD40_4 650 689 IPR001680 GO:0005515
Dod05g1894 854 SMART WD40_4 607 646 IPR001680 GO:0005515
Dod05g1894 854 SMART WD40_4 775 813 IPR001680 GO:0005515
Dod05g1894 854 MobiDBLite consensus disorder prediction 95 115 - -
Dod05g1894 854 ProSiteProfiles Trp-Asp (WD) repeats profile. 822 854 IPR001680 GO:0005515
Dod05g1894 854 Coils Coil 103 141 - -
Dod05g1894 854 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 31 854 IPR044716 GO:0003714
Dod05g1894 854 Coils Coil 243 263 - -
Dod05g1894 854 CDD WD40 568 854 - -
Dod05g1894 854 ProSiteProfiles Trp-Asp (WD) repeats profile. 738 770 IPR001680 GO:0005515
Dod05g1894 854 ProSitePatterns Trp-Asp (WD) repeats signature. 633 647 IPR019775 -
Dod05g1894 854 ProSiteProfiles Trp-Asp (WD) repeats profile. 572 603 IPR001680 GO:0005515
Dod05g1894 854 ProSiteProfiles Trp-Asp (WD) repeats profile. 657 698 IPR001680 GO:0005515
Dod05g1894 854 PANTHER LISH-SSDP-WD40 31 854 - -
Dod05g1894 854 ProSiteProfiles LIS1 homology (LisH) motif profile. 31 60 IPR006594 GO:0005515
Dod05g1894 854 SUPERFAMILY WD40 repeat-like 564 854 IPR036322 GO:0005515
Dod05g1894 854 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 657 694 - -
Dod05g1894 854 Pfam WD domain, G-beta repeat 610 646 IPR001680 GO:0005515
Dod05g1894 854 Pfam WD domain, G-beta repeat 653 688 IPR001680 GO:0005515
Dod05g1894 854 Pfam WD domain, G-beta repeat 817 854 IPR001680 GO:0005515
Dod05g1894 854 Pfam WD domain, G-beta repeat 575 603 IPR001680 GO:0005515
Dod05g1894 854 Pfam WD domain, G-beta repeat 734 768 IPR001680 GO:0005515
Dod05g1894 854 MobiDBLite consensus disorder prediction 133 161 - -
Dod05g1894 854 MobiDBLite consensus disorder prediction 418 500 - -
Dod05g1894 854 Pfam LisH 31 55 IPR006594 GO:0005515
Dod05g1894 854 Gene3D - 702 854 IPR015943 GO:0005515
Dod05g1894 854 Gene3D - 539 701 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1894 Dod-Chr5 44539568 44547146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1894 651 853 Miscellaneous Gene Families AT5G08390 24.286 1.54e-09 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Dod05g1894 WD40 0.0021 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1894 - - gmx:100801265 1092.41