Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1876 ATGTCATCAAGTGGAATCACTTGGAGCTATGAAGAAGAGAAGGCATTTGAGAATGCCATAGCCATGCATTGGATTGAGGAAGAGTCAAAAGAGCAATGGGAGAAGATTGCGTCAGCAGTTCCAAGCAAAACCATGGAAGAATTGAAGCAACATTACAAGGTCCTTGTAGAGGATGTAAGTGCAATAGAGGCTGGTCATATACCATTTCCAAACTATGCTTCAGAGGAAACTACATCTTCAAATAAAGACTTCCATGGCTCTTCCAAGTCTACAAATTCAGATAAGAGATCAAATTGTAATTATGGAAGTGGGTTTTCTGGCTTAGGACATGACTCCACCACACATAGTGGTGGTAAAGGAGGCATGTCAAGGTCATCAGACCAAGAAAGGAGAAAAGGAATTCCATGGACAGAAGAGGAACACAGGTTATTTTTGCTTGGTCTAGACAAGTTTGGAAAAGGAGATTGGAGGAGCATTTCAAGGAACTTTGTGATTTCTAGGACTCCTACTCAAGTGGCAAGCCATGCACAGAAGTACTTCATTAGGTTGAACTCTATGAATAGGGATAGGAGGAGGTCTAGTATCCATGATATCACAAGTGTGAACAATGGAGATGTGGCTAGTAATCAGGCACCAATTACAGGCCAGCATAGCAGCACAATCCCTTCTTCAAGCACAATGGCTGTGGGAGTACAATCAGTGAAGCATAGAGGTCAGCCCCATCATCATATAACTGCTGGTATAGGCATGTATGGTGCACCAGTTGGGCATCCTGTGGCTGCTGCTCCTGGCCATATGGCATCTGCAGTTGGGACTCCTGTCATGCTTCCTCCTGGAACCCACCCCCATCATCCCCATCCTCATCCACCTTATGTTGTTCCTCTTGCTTACCCAATGGCACCTCCAACAATGCACCAATAA 921 0.4463 MSSSGITWSYEEEKAFENAIAMHWIEEESKEQWEKIASAVPSKTMEELKQHYKVLVEDVSAIEAGHIPFPNYASEETTSSNKDFHGSSKSTNSDKRSNCNYGSGFSGLGHDSTTHSGGKGGMSRSSDQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNQAPITGQHSSTIPSSSTMAVGVQSVKHRGQPHHHITAGIGMYGAPVGHPVAAAPGHMASAVGTPVMLPPGTHPHHPHPHPPYVVPLAYPMAPPTMHQ* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1876 306 SUPERFAMILY Homeodomain-like 130 185 IPR009057 -
Dod05g1876 306 SMART sant 132 182 IPR001005 -
Dod05g1876 306 SMART sant 4 58 IPR001005 -
Dod05g1876 306 Gene3D - 134 186 - -
Dod05g1876 306 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Dod05g1876 306 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Dod05g1876 306 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Dod05g1876 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 184 IPR017930 -
Dod05g1876 306 MobiDBLite consensus disorder prediction 72 123 - -
Dod05g1876 306 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Dod05g1876 306 PANTHER TRANSCRIPTION FACTOR MYBS1 1 305 - -
Dod05g1876 306 PANTHER TRANSCRIPTION FACTOR KUA1 1 305 - -
Dod05g1876 306 CDD SANT 135 180 IPR001005 -
Dod05g1876 306 SUPERFAMILY Homeodomain-like 8 62 IPR009057 -
Dod05g1876 306 MobiDBLite consensus disorder prediction 71 135 - -
Dod05g1876 306 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Dod05g1876 306 Gene3D - 1 69 - -
Dod05g1876 306 CDD SANT 7 56 IPR001005 -
Dod05g1876 306 ProSiteProfiles SANT domain profile. 1 60 IPR017884 -
Dod05g1876 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 182 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1876 Dod-Chr5 44296660 44298216 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod05g1876 Myb_DNA-binding 9.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1876 - - vun:114176836 509.605