Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1874 ATGTGTTTCTGTGTAACTCTCACTGAGAAAGAATTTGCACACCAGCTTAGGCCTTTCTTTCTTTTCTTTTTTTTTTTTTTGGCTTTTTGGATTGTAGAAAAAGGAAAGATTCTCTTGTTCTTGTTTGGTTTTGTGTGCGCTGTGATTGAATTAGAATTACCCTTTGGAATTGGAATATATATAAGAAGAACAGGAAGGGACTTTCTGTGTGTCTTGGGAGCAAGGAAGATGAGCTGGCGCAGGGTGTTGAAGTCTGCGCAGGCACTCGCAGCTCACATCTTTCTGCTCTGCTTCACTGCCTTGCTTGTTCTCAGGCTCGATCACCGTCTCTCTTCTTCTTGGTGGATAATATTTTTCCCTCTTTGGATGTTTCATGCTGTTGTGGCTCGAGGAAGGTTTTCATTACCAGCGCCGTCTGCCCCGCGTAATCGAAATTGGGCACCGTGTCATACCGTCGTTGCAATGCCGTTGCTTATATCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCATAAATGTCTATGGCCTTGCAGCATTCAGTTTGAAGATTGTGTTCCTTCCCTTAATAACCTTTGAAATCATTATTCTCATTGACAATTTCAGAATGTGTAGGGCTCTAATGCCAGGAGATGAAGAAAACGTGAGTGATGAAGCAATATGGGAAACTCTTCCTCACTTCTGGGTTGCGATCTCTATGGTCTTCTTCATTGCTGCGACAGTTTTCACTCTCTTAAAACTGAGTGGTGATGTAGGTGCTCTGGGCTGGTGGGACTTATTTATTAACTTTGCCATCGCTGAGTGCTTTGCTTTTCTTGTATGTACAAAGTGGTCTAATCCGGCCATTCATAGAAATGCTAGAGAACCCAGTTCATCTTCTACTACAATTAGATATCTTGACTGGAACAGTGGTTTAGTAGTTTCTTCAGAGGAAAATCAACGCCAGGAGAGAATGTGTAGCCTGCAAGATATAGGAGGTCATTTCATGAAAGTACCAATTATCATATTCCAGATTATTCTATGTATGTACTTAGAGGGAACACCTGCTTGTGCTTCATATATTCCTCTTCCAGTTCTTTTCTCTCCTCTTTTCCTATTGCAAGGTGCTGGTCTACTGTTAGCTGCATCTAAGTTAGTGGAGAAACTTATTCTGCTACTGAATAGTGGAGCTGGTGGAGGAATATATTTTAGATGTACTTCAAGAGCTCATGATTGCTTGGGGTTCTTGCACCATGGTTCCAGGTTATTGGGTTGGTGGTCAATTGATGAAGGAAGTCAGGAAGAACAGGCACGACTGTACCATGAGGGAGCATCTGGGTACAATACTTTCTCTGGCTACCCACCTGAGATTGTTAAGAAAATGCCTAAAAAGGATCTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAGCAGACAGAAATTACAAAATACAGCCAGCAAGAGTATGAAAGACTTCAAAATGAGAAAGTGTTATGCAGAGTTTGTTTTGAGGGAGAGATTAGCGTTGTATTGCTCCCATGTAGACATCGCATTCTTTGCAGCAAATGCTCGGAGAAATGTAAGAAGTGCCCAATCTGCCGCGACGCAATCGCAGAGCGCTTACCTGTGTATGATGTTTAG 1626 0.4237 MCFCVTLTEKEFAHQLRPFFLFFFFFLAFWIVEKGKILLFLFGFVCAVIELELPFGIGIYIRRTGRDFLCVLGARKMSWRRVLKSAQALAAHIFLLCFTALLVLRLDHRLSSSWWIIFFPLWMFHAVVARGRFSLPAPSAPRNRNWAPCHTVVAMPLLISFELLLCIYLESINVYGLAAFSLKIVFLPLITFEIIILIDNFRMCRALMPGDEENVSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGWWDLFINFAIAECFAFLVCTKWSNPAIHRNAREPSSSSTTIRYLDWNSGLVVSSEENQRQERMCSLQDIGGHFMKVPIIIFQIILCMYLEGTPACASYIPLPVLFSPLFLLQGAGLLLAASKLVEKLILLLNSGAGGGIYFRCTSRAHDCLGFLHHGSRLLGWWSIDEGSQEEQARLYHEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRILCSKCSEKCKKCPICRDAIAERLPVYDV* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1874 541 Pfam Transmembrane Fragile-X-F protein 104 366 IPR019396 -
Dod05g1874 541 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 77 541 - -
Dod05g1874 541 Pfam Zinc finger, C3HC4 type (RING finger) 491 533 - -
Dod05g1874 541 SUPERFAMILY RING/U-box 485 535 - -
Dod05g1874 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 539 IPR013083 -
Dod05g1874 541 SMART ring_2 494 528 IPR001841 -
Dod05g1874 541 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 77 541 - -
Dod05g1874 541 ProSiteProfiles Zinc finger RING-type profile. 494 529 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1874 Dod-Chr5 44278996 44287448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1874 77 541 C3H Transcription Factor Family AT1G73950 71.183 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1874 - - gmx:100791390 832.787