Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1872 ATGTATCCTTCAAATAGTAGCTCATTCTTCAACGGCAACGACCTAATCTCCTATCCTAACCAACCATTTTGCTCTAGGACTTTATCCACTGAAAGCAACCCATCTTCAAAAAATCAAGAAACCAATTGTGCCCTCCCTCCTCCTCCTGCTCCTTCTTCTTTGTCCTTTTTTCCATTCCCTTATTCTCCCTTTGATGACAATGAGATTTTCCTCCAACAACACCATGATGGTGACCTCCTTGATCTCCAACATCACCACCATCATCAATCTCTAGCACCACCTCCTCATGAGGCTGCAGCAGGTGTAGTAAACATGGAGGTTTCAATCACAACCACCACCAAGGTAATTCCTCCTAATAAATCAACAACACCATCAACAACATCTCATCACGATCAGCAGCAGATCCCAATGAGGAGAAGGTCCAGCAAGAGGGACCGGCACAGCAAGATCAACACGGCGAAAGGGCTAAGGGATCGGCGAATGAGATTGGCCCTCGATGTTGCCAAGAGGTTCTTTGGCCTTCAAGACATGCTAGGCTTTGACAAGGCAAGCAAGACCGTGGAGTGGTTGCTGAACCAAGCAAAAGTTGAGATCAAGCAACTTGCAAGGGAGAAGAATATCCACCCAAGTTGCAGCAGTGTTGGTGCCAAGAGTGCATCCTCAACTTCGGAATGTGAAGGTGTGTCAAGCTTGGATGAGGTTGCGGTTAGTGGAAATCAAGGCCAAGAGGGAGATGAGAAAGCTGTCCCAATTCCAACCACAACAATAGTGAAGAGAAGAACTAATAATAGGCTTTCAAGAAAGAGTGCATTCAATCCTATTAGTAAGGAATCAAGGGGGAAAGCAAGGGAGAGAGCTAGGGAGAGGACATGGGAGAAGGAGAAGCTGAGGACTAGGAGGCTTGGTGTTGTGGATGAAGAATCAAAGGCTAATAAGCAATGCAACAACAACGAGGCAATTATAGCAATCCATAGCTTGAGCAGATTGGGTCCGTGGAACCCCTTTGAAACGGTGGAAGAGAGCCAAATTAGAGTGAATCCTTCCTTGGATGTGCTGGCTTGTGAGGCTGAGGAACGAAGTTCTCAAGCAAAGGATCAGCATTTGGGTTGCGTGGATCAGGATTTGGCGCATGATGATTCTTTTGTGATTATGAGCAGATGGAGCCCAGCAATGATTCTGAATTCTCTCAATAACCCCGGAATCCTTCAAGAACATCAATTTGCAGAATTTCAGTCCATGGGGAAACCTTGGGAGGCCTACAACAATCACATCTGA 1275 0.4612 MYPSNSSSFFNGNDLISYPNQPFCSRTLSTESNPSSKNQETNCALPPPPAPSSLSFFPFPYSPFDDNEIFLQQHHDGDLLDLQHHHHHQSLAPPPHEAAAGVVNMEVSITTTTKVIPPNKSTTPSTTSHHDQQQIPMRRRSSKRDRHSKINTAKGLRDRRMRLALDVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLAREKNIHPSCSSVGAKSASSTSECEGVSSLDEVAVSGNQGQEGDEKAVPIPTTTIVKRRTNNRLSRKSAFNPISKESRGKARERARERTWEKEKLRTRRLGVVDEESKANKQCNNNEAIIAIHSLSRLGPWNPFETVEESQIRVNPSLDVLACEAEERSSQAKDQHLGCVDQDLAHDDSFVIMSRWSPAMILNSLNNPGILQEHQFAEFQSMGKPWEAYNNHI* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1872 424 MobiDBLite consensus disorder prediction 112 155 - -
Dod05g1872 424 Pfam TCP family transcription factor 142 295 IPR017887 -
Dod05g1872 424 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 65 387 IPR005333 GO:0003700
Dod05g1872 424 Coils Coil 421 424 - -
Dod05g1872 424 MobiDBLite consensus disorder prediction 26 43 - -
Dod05g1872 424 MobiDBLite consensus disorder prediction 26 49 - -
Dod05g1872 424 ProSiteProfiles TCP domain profile. 143 201 IPR017887 -
Dod05g1872 424 ProSiteProfiles R domain profile. 276 293 IPR017888 -
Dod05g1872 424 MobiDBLite consensus disorder prediction 112 132 - -
Dod05g1872 424 PANTHER TRANSCRIPTION FACTOR TCP18 65 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1872 Dod-Chr5 44241433 44243039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1872 139 321 TCP Transcription Factor Family AT3G18550 41.905 2.98e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Dod05g1872 TCP 1.3e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1872 - - adu:107471910 381.719