Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1857 ATGCCAGAACCAGAATACAATCTTCAATCCTCGCCTATGGACGAAACCAACACGAAGAAGATGAATAAGAAGAAGAAGAAGCAGAGCAAAAAACGACCTCGGAATTCCGAAACACCTGAACCTCAACAACACGACGGTGGTGTAGAACCCGTCGAAAACACGAATAAGAAGAAGGAGGAGAAGGAATTGAACAGCGTAGAAGAAGAAACCGAAGTTGTTGGCAAGGCTGAAATCGACGAAGCTGAAGTAGAAGAAGAAGAAGAAGAGAAAAATGCGAAGAAGAAGAAGAAGGGTGGTGGAGGTTCTGGCGGAATCATGAGCAACGAGTCATTCTCTTCTCTAGGTTTATCGGAACCCACTGCTAAGGCCATTGCGGACATGGGTTTCGAGTACATGACTCAGATTCAAGCGAGGGCCGTTCCGCCGCTTCTCATTGGAAAAGACGTTCTCGGTGCCGCAAGGACAGGCTCTGGAAAGACCCTAGCATTCTTGATCCCCGCTGTGGAGCTCCTTTACAACGTTCAATTCACCCCTCGCAACGGTGCTGGTGTTGTTGTCATATGCCCCACCAGGGAACTCGCAATTCAGACACATGCTGTGGCCAAGGAGCTTCTTAAGTATCATTCGCAGACTCTTGGGTTGGTTATTGGAGGCTCGACTAGGAAACTTGAAGCTGAACGCATTGCTAAAGGGGTGAATCTGTTGGTGGCAACACCTGGTCGTCTTCTGGATCATCTTCAGAATACGAAGGGGTTCATATATAAAAACTTGAAGTGCCTCATGATCGATGAAGCTGACAGGATATTGGAAGCTAACTTTGAGGAGGAAATGAAGCAGATTATTAAGATCCTTCCAAAGAATAGGCAGACAGCTTTATTTTCAGCTACACAAACAAAGAAGGTTGAGGATCTTGCTCGCTTGTCATTTCAGACACCTCCTGTTTATATTGATGTAGATGATGGGAGAAACAAGGTCACAAATGAAGGATTGCTGCAGGGTTATGTTGTTGTTCCCTGTGCCAAGCGATTTATTGTTCTGTATTCTTTCTTGAAGAGACATCAGTCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAATTCTGTCAAATTCCACGCTGACATTCTTAATCTCATTCATTTGAATTGCTCAAGTATTCATGGAAAGCAAAAGCAGCAGTCCCGCACAACTACCTTCTTTGACTTCTGCAAAGCAGAAAAGGGGATTTTGCTCTGTACTGATGTTGCTGCTCGCGGACTTGACATACCTGCTGTGGACTGGATTGTGCAGTATGATCCACCAGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAGGGAAATGCTCTGCTTTTCCTGATTCCTGAAGAATTACAATTTCTTCGCTATCTGAAGGCAGCTAAGGTCCCTGTTAAAGAGTATGCATATGATGAAAAGAAGGTGGCAAATGTACAGTCTCATCTGGAGAATTTGGTAGTCAACAATTTCTTTTTGAATAAGATGGCTAAAGAAGCTTATAGATCATATCTATTAGCATACAATTCACATTCTATGAAGGATATATTCAATGTTCACCGCCTGGATTTGCAGGCTGTTGCTGCTTCTTTCTGTTTTTCAAACCCACCAAATGTGAGTCTGAACATAAACAGCAGCAAGCAAAGGAAGAAAATGCGTAAGGTTGATGGAAGCAGGCATGGATTCAGCGACAGCAATCCTTATGGAAAGAGAAATGCTGATGATAACCGGCAATTTGTGAGGCATTAG 1785 0.437 MPEPEYNLQSSPMDETNTKKMNKKKKKQSKKRPRNSETPEPQQHDGGVEPVENTNKKKEEKELNSVEEETEVVGKAEIDEAEVEEEEEEKNAKKKKKGGGGSGGIMSNESFSSLGLSEPTAKAIADMGFEYMTQIQARAVPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVQFTPRNGAGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSTRKLEAERIAKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTPPVYIDVDDGRNKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHADILNLIHLNCSSIHGKQKQQSRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVQSHLENLVVNNFFLNKMAKEAYRSYLLAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPNVSLNINSSKQRKKMRKVDGSRHGFSDSNPYGKRNADDNRQFVRH* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1857 594 CDD DEADc_DDX18 120 317 IPR044773 GO:0003724|GO:0005524
Dod05g1857 594 Coils Coil 76 98 - -
Dod05g1857 594 Pfam DEAD/DEAH box helicase 133 304 IPR011545 GO:0003676|GO:0005524
Dod05g1857 594 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 57 585 - -
Dod05g1857 594 MobiDBLite consensus disorder prediction 50 72 - -
Dod05g1857 594 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 342 489 IPR001650 -
Dod05g1857 594 Gene3D - 330 570 IPR027417 -
Dod05g1857 594 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 109 137 IPR014014 GO:0003724
Dod05g1857 594 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 315 IPR014001 -
Dod05g1857 594 CDD SF2_C_DEAD 330 460 - -
Dod05g1857 594 Pfam Helicase conserved C-terminal domain 345 449 IPR001650 -
Dod05g1857 594 SMART DUF4217_3 490 553 IPR025313 -
Dod05g1857 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 471 IPR027417 -
Dod05g1857 594 Coils Coil 51 71 - -
Dod05g1857 594 Gene3D - 48 319 IPR027417 -
Dod05g1857 594 MobiDBLite consensus disorder prediction 558 594 - -
Dod05g1857 594 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 261 269 IPR000629 -
Dod05g1857 594 PANTHER RNA HELICASE 57 585 - -
Dod05g1857 594 SMART ultradead3 128 333 IPR014001 -
Dod05g1857 594 MobiDBLite consensus disorder prediction 1 113 - -
Dod05g1857 594 Pfam Domain of unknown function (DUF4217) 491 551 IPR025313 -
Dod05g1857 594 SMART helicmild6 369 450 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1857 Dod-Chr5 44108481 44114515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1857 102 469 Eukaryotic Initiation Factors Gene Family AT3G19760 29.679 3.75e-48 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1857 K13179 - gmx:100797375 938.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1857 05 44108481 44114515 Dod05g1857 05 44108481 44114515 ECH