Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1853 ATGTTTTTTCTTTACTGTAATGCATCATTGTTTTTGCTTGTCGCTTACCAAAGCTATGCTGTCTGTCCAGCAACTATGACAAAAATTATTAAAGAGATGTTACCCCCAGATGTACGTGTCGCAAGAGATGCTCAAGATCTATTGATCGAGTGTTGTGTAGAGTTTATAAACCTCGTTTCATCAGAGTCCAACGAAGTTTGTAACAGAGAGGAAAAACGGACTATTGCACCTGAGCATGTACTGAAGGCTTTAGAGGTTCTTGGATTTGGTGAGTATATTGAAGAAGTATATGCAGCATACGAACAGCACAAGCTGGAGACCATGGACTCTTTAAAAGGTGGTAAGTGGAGCAATGGCGCTGAGATGACCGAAGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCTAGGATGAACGGTGGGGCTATTCCTTCCAAGCAGCCAGATGCTGACCAAAGTTTAGATAGCTAA 483 0.4265 MFFLYCNASLFLLVAYQSYAVCPATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGAIPSKQPDADQSLDS* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1853 160 PANTHER PROTEIN DR1 HOMOLOG 23 159 IPR044255 -
Dod05g1853 160 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 84 IPR003958 -
Dod05g1853 160 PANTHER PROTEIN DR1 HOMOLOG 23 159 - -
Dod05g1853 160 Gene3D Histone, subunit A 15 146 IPR009072 GO:0046982
Dod05g1853 160 SUPERFAMILY Histone-fold 24 147 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1853 Dod-Chr5 44085008 44089117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1853 24 156 CCAAT-DR1 Transcription Factor Family AT5G23090 82.353 6.42e-78 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dod05g1853 CBFD_NFYB_HMF 1.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1853 K21751 - gmx:100807912 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1853 05 44085008 44089117 Dod05g1853 05 44085008 44089117 ECH