Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1848 ATGGAAAACCTAGGCAATTACTTTCCAGACCCAACTCAGGACCAAAACAAGAATCTCCCTTTCCTGCCTCTTGAAATAGACAAGTCTTATGAGAAAAGAGAGGGGACTAATAGTACTATGAAGATTCCAAAAAAGGCAAAAAAGATCAGTGACAAGAAGTTTCTTGGGGTAAGACAAAGGCCTTCAGGCAGATGGATTGCTGAGATCAAGGACTCATCACAGAAACTGAGACTTTGGCTGGGAACTTTTGACAGACCAGAAGAGGCTGCCCTGGCTTATGACTGTGCTGCTAGGCTTCTCAGAGGAAGGAATGCAAAAACAAACTTTCCAATAAGCCATGGAATCATGAGCACTACTGATCATGAGGAAAACTACTGCAGCATTTTGGGGAAGAATCCCAGGGCTTACCAGCTCCTTAAGCATGCAGTGATGAAGAACCGTGCTGCGGTTTCCTCATCATCATCTGTTTGTTCCACAATCATGCCCTGGAAAAACCAGATCATGAGAGATGATGATGAATTTGACACGGTTGTCGAGGAAACTATAGTTTGCTCCATCCCTGATGAACAAGGTTCTGGTGGGTGTAGTGGAATTTCATTTGGGAGTAGTAAGGTTTATTCTTCTGTTTATGTATCTCCTTCTTTCAGTGCTTCTGATCATTGTCAAAATGGGGAAGTTCATGAAGGAACCTCCTAA 696 0.431 MENLGNYFPDPTQDQNKNLPFLPLEIDKSYEKREGTNSTMKIPKKAKKISDKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDRPEEAALAYDCAARLLRGRNAKTNFPISHGIMSTTDHEENYCSILGKNPRAYQLLKHAVMKNRAAVSSSSSVCSTIMPWKNQIMRDDDEFDTVVEETIVCSIPDEQGSGGCSGISFGSSKVYSSVYVSPSFSASDHCQNGEVHEGTS* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1848 231 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 226 - -
Dod05g1848 231 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Dod05g1848 231 Gene3D AP2/ERF domain 52 112 IPR036955 GO:0003700|GO:0006355
Dod05g1848 231 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Dod05g1848 231 Pfam AP2 domain 53 102 IPR001471 GO:0003700|GO:0006355
Dod05g1848 231 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Dod05g1848 231 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Dod05g1848 231 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Dod05g1848 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 8 226 - -
Dod05g1848 231 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1848 Dod-Chr5 44000074 44000769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1848 44 109 AP2-EREBP Transcription Factor Family AT5G19790 65.152 1.61e-24 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod05g1848 AP2 9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1848 K09286 - gmx:100807374 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1848 05 44000074 44000769 Dod05g1848 05 44000074 44000769 ECH