Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1837 ATGGCACAAGATACTGTTTCTGGTGCTGATTCGCCTCGGCGACGTTATGGTCTGCTACGAGACCAGGTTCAGCTGGTTAAAAGAAAGGATTGTGATCGCTATGAAATTGTTCCAATCCAAGATTCGTTGTCATTTGAGAAGGGGTTCTTCATAGTTATTCGTGCATGCCAGTTGTTGGCTCAAAAGAATGATGGGATCATATTAGTCGGAGTTGCAGGTCCCTCTGGAGCAGGGAAAACTGTTTTCACTGAGAAGGTCCACAATTTTATGCCAAGCTTAGCTGTCATCTCAATGGACAATTATAATGATTCTAGTCGAATCATTGATGGCAATTTTGATGACCCTCGGTTGACGGATTATGATACCTTGCTCGAAAATATACGAGGTCTTAAAGCAGGGAAGCCAGTTCAGGTTCCAATATATGATTTCAAGTCTAGTTCTCGCATAGGGTGCAGGACCATTGAAGTCCCTAGCTCCCGTATTGTCATCATAGAAGGCATCTACGCCTTAAGTGAAAAATTACGACCTTTACTTGATCTTCGTGTTTCAGTCACTGGTGGAGTTCACTTTGACCTTGTCAAGCGTGTTTTGCGCGACATTCAGCGTGCTGGCCAAGAGCCTGAAGAAATCATTCATCAAATCTCTGAAACGGTATATCCTATGTATAAAGCTTTTATTGAGCCAGATCTCCAAACAGCGCATATTAAAATTATTAACAAGTTTAATCCATTCTCTGGATTCCAGAATCCCACTTACATATTGAAGTCAACAAAAGCTGTGACAGTAGATCAGATCAAGGAAGTTATTGCTGCTGAGCATGCTGAAACCAGAGAGGAAACATACGACATATATCTTCTACCCCCTGGGGAAGACCCTGAAGCATGCCAATCATACTTGAGAATGAGAAACCGGGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTTACTGATAGTCCATTCATAATATCACCAAGAATAACTTTTGAGGTCAGTGTGCGCCTTCTTGGAGGGCTGATGGCGTTGGGATACACAATTGCAGCTATCCTGAAAAGAAGCAGTCATGTCTTTCATGATGATAAAGTGTCTGTAAAAACTGATTGGCTAGAACAACTTAATCGCCTATATATCCAGGTGCAAGGAAAAGACAGAAACTATGTCAAACTAGTTGGAGACAAATTGGGGTTGGATGGTTCATATGTTCCTCGCACTTACATTGAACAAATTCAGCTAGAAAAGCTCGTTAATGATGTGATGGCACTGCCAGAGGATCTTAAGACAAAACTTAGCATTGATGATGATATGGTTTCAAGCCCCAAAGAGGCCCTTTCTAAAGCTTCTGCAGACAGGAGAATGAAGCACCTGAACCGTGGTATTTCTCACTCTTTTTCAAGCCAGAGGGACAAGCATCTATCTAAGTTGACGAGATTAGCTATAAATAACAGAAGATTTGATGGGAGAGCTCTAGAATCACCTGCACCGATTGCTAACCAAGGAGTCATCACTCAGCTTTCTGAACAAATTTCCACACTAAATGAAAGGATGGATGAGTTCACCTCCCGTATTGAGGAACTGAATTCAAAGATTGCTACCAGAAAAGCCAGTCAACAGAACTTGGCTTTGCCGGCTGAAGCTTCCAATGGCCCAGGTCCCACTTCTCTCTTTATATCTGGATTGGGCAATGGTACATTGACTGGATCATTGCTTCCTCATTCTTCATCATCTTCCCAATTGGCGAGGGATCCTCCTCTGATGGAAGAGGTTTTAGTTGTTGCACGGGGCCAACGTCAAATCATACATCAGCTAGATTCTCTGAGCAATCTGTTGCATGAATATTTTGGAGAAAGGTCACGGCTTGAAAGAACGGAGCAGACAAGCAGAATACGCGAAATTGAATCAGTTGCCATCCCCCTGGTTCTGACTTTGGCCGTTGGTGCTGTTGGTGTGTTCCTGTTCAAAGGTTTCACATCCCAAAAGTAA 1980 0.4278 MAQDTVSGADSPRRRYGLLRDQVQLVKRKDCDRYEIVPIQDSLSFEKGFFIVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVHNFMPSLAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKAGKPVQVPIYDFKSSSRIGCRTIEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQNPTYILKSTKAVTVDQIKEVIAAEHAETREETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVSVKTDWLEQLNRLYIQVQGKDRNYVKLVGDKLGLDGSYVPRTYIEQIQLEKLVNDVMALPEDLKTKLSIDDDMVSSPKEALSKASADRRMKHLNRGISHSFSSQRDKHLSKLTRLAINNRRFDGRALESPAPIANQGVITQLSEQISTLNERMDEFTSRIEELNSKIATRKASQQNLALPAEASNGPGPTSLFISGLGNGTLTGSLLPHSSSSSQLARDPPLMEEVLVVARGQRQIIHQLDSLSNLLHEYFGERSRLERTEQTSRIREIESVAIPLVLTLAVGAVGVFLFKGFTSQK* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1837 659 Pfam CYTH domain 273 405 IPR023577 -
Dod05g1837 659 Gene3D - 258 414 - -
Dod05g1837 659 Coils Coil 501 528 - -
Dod05g1837 659 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 6 647 - -
Dod05g1837 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 237 IPR027417 -
Dod05g1837 659 Pfam Phosphoribulokinase / Uridine kinase family 69 237 IPR006083 GO:0005524|GO:0016301
Dod05g1837 659 SUPERFAMILY CYTH-like phosphatases 260 408 IPR033469 -
Dod05g1837 659 PRINTS Uridine kinase signature 189 199 - -
Dod05g1837 659 PRINTS Uridine kinase signature 133 148 - -
Dod05g1837 659 PRINTS Uridine kinase signature 66 83 - -
Dod05g1837 659 PRINTS Uridine kinase signature 225 238 - -
Dod05g1837 659 Gene3D - 67 257 IPR027417 -
Dod05g1837 659 CDD UMPK_like 68 240 - -
Dod05g1837 659 PANTHER URIDINE KINASE 6 647 - -
Dod05g1837 659 ProSiteProfiles CYTH domain profile. 249 411 IPR023577 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1837 Dod-Chr5 43934893 43941090 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1837 67 237 PRT Gene Family AT5G40870 27.473 4.94e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1837 K00876 - gmx:100803122 1123.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1837 05 43934893 43941090 Dod05g1837 05 43934893 43941090 ECH
Dod04g1240 04 33278759 33296463 Dod05g1837 05 43934893 43941090 PCT