Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1830 ATGGCTGATGTGACGTACCTCCTCCACCCACACCACCCGGCAGAACCCGAGGACGACCCTCACCACCAAACCCTAACCCTACCACCCTACTGGTCCCCTCACGATTTCGACTTCTACGCCTCCGATCCAGAATTCCCCCTTCATCCCCAACAACAACAACAGCAACAACAACCACCCCGCAATCGCTTTCCCCGACCCATCCTCGACCACGAGAACCAGGTCAATTTCGTCATGGACCTCTTCCAGCAGCGCGTCGAGCAGTCCCAGGTCATGGGGGCCCACCACCCCTTAAACGACGTCGTTTTCGACCCCAATTCCGATTTGGGAATCGACGACATGGACGCCTTGGGCCTCGATTTAGGGTTCTCCCCCGACGGCAACTCCATTTCCATGCACCGCTCCGCCGCTGGCGACGCAGCCGCTTCCACTGCAGACGCCGATGATGACGATGACTTCTTCTTCAGCAGGAGGGTTTCGGGATCCGAGTCCGGCGAGGCGCCGTTCGACAACTGCGTCCGTCTCATCGGGTTCGGATCGGAATCCGAGGAGGATGAAAACGACGGCGTTTTGGGGATCTGCATGCATTCCGACGAGGAGTTCAACGCGCACGACGAGAACGACGAGGTTTCGAGCATTCCTCTGTGCTGGGACGCGCTTCAATTGGAGGATAACAACAGGGAAAGCAACGAGGATTTCGAGTGGGAAGAAGTTGACGGAAGGGTCGACGAGAGGGAGGTTCTGAGCATGCTCGCCGTCGAAGATGATAGGTCCGTTTCGCCAATCACCGGAATCGAACCCGAAGAAGAAGAAGTTACCGTTGTTAGGGTTGGTGGAATGGAGAATTTGGAGTGGGAAGTTTTGCTTAACGCAAACAATTTGGACACAATCGCGAGCCCCGATTTGGACCACGATCCCGAACCCTATTTCGGTGACCACGATGATTACATCTACACTGCGGAATATGAAATGATGTTTGGTCAATTCGCTGAGAACGATAACCCTTTGATGGGTAGGCCACCGGCTTCGGCTTCCATTGTTCGGAATTTGCCTTGTGTTGTTGTGACCAAAGATGATGTGGATGGGAACAATGCAGTTTGTGCAGTTTGCAAAGATGAATTTGGTGTTGGGGAAGAGGCAAAGGTGTTACCTTGCTCGCATCGTTATCATGGTGATTGCATTGTGCCTTGGTTGGGGATTAGGAACACTTGCCCAGTTTGTCGCTATGAGTTCCCAACTGATGATGCTGATTATGAGCGTAGGAGGGCTCAGAGATCTGGCCGGAGGATGTGA 1290 0.5388 MADVTYLLHPHHPAEPEDDPHHQTLTLPPYWSPHDFDFYASDPEFPLHPQQQQQQQQPPRNRFPRPILDHENQVNFVMDLFQQRVEQSQVMGAHHPLNDVVFDPNSDLGIDDMDALGLDLGFSPDGNSISMHRSAAGDAAASTADADDDDDFFFSRRVSGSESGEAPFDNCVRLIGFGSESEEDENDGVLGICMHSDEEFNAHDENDEVSSIPLCWDALQLEDNNRESNEDFEWEEVDGRVDEREVLSMLAVEDDRSVSPITGIEPEEEEVTVVRVGGMENLEWEVLLNANNLDTIASPDLDHDPEPYFGDHDDYIYTAEYEMMFGQFAENDNPLMGRPPASASIVRNLPCVVVTKDDVDGNNAVCAVCKDEFGVGEEAKVLPCSHRYHGDCIVPWLGIRNTCPVCRYEFPTDDADYERRRAQRSGRRM* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1830 429 MobiDBLite consensus disorder prediction 46 61 - -
Dod05g1830 429 CDD RING-H2_RNF126_like 366 407 - -
Dod05g1830 429 SMART ring_2 366 406 IPR001841 -
Dod05g1830 429 Pfam Ring finger domain 366 407 IPR001841 -
Dod05g1830 429 SUPERFAMILY RING/U-box 350 413 - -
Dod05g1830 429 MobiDBLite consensus disorder prediction 41 66 - -
Dod05g1830 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 413 IPR013083 -
Dod05g1830 429 ProSiteProfiles Zinc finger RING-type profile. 366 407 IPR001841 -
Dod05g1830 429 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 69 425 - -
Dod05g1830 429 PANTHER - 69 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1830 Dod-Chr5 43843105 43844781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1830 8 413 C3H Transcription Factor Family AT5G60820 35.731 2.02e-55 187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1830 05 43843105 43844781 Dod05g1830 05 43843105 43844781 ECH