Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1828 ATGAAAATGTCTAGCGGAAGCGCCTCAGAAGAGTTCTTCCCAAACAAACGCCTCAGAACCGAACCGCCGAACGCCGATGGTGGCGGTGACGACCAGCCGGTCTGTTGCGGAATCTGTCTCGCCGGCCGCGGCGCCTCGATCGCCGGCGAGATCGACTGCTGCAGCCATTACTTCTGCTTCCCGTGCATCATGGAGTGGGCAAAGCACGAGTCTCGGTGCCCTATCTGCCGCCAGAGGTTCTCGAACGTTCGCAGGCCACCCAAGCAAGGCGTCTTATCTTTCTCCCGGGACGTTAAGGTCCCCATTCGTGATCAGGTTTATCATCCTTATGGGAACATGACTACTGGTCCTGCTGATTCCCACGTTGAAGCCAAATGCAGTATCTGTCATGGTGTGACAGATGAAAATCTTATGCTGCTTTGCGACCTTTGCAATACTGCTGCTCATACATACTGTGCTGGCCTTGGCTACACCGTTCCTGAAGGTGATTGGTTTTGTTATGACTGTGCCATTTCCCGGGAGACCAATGCAGATGAAGAATCAGAGCAGCAACAAAGTGTTGTGCTGAGTGCGAGAAGGACAATAGCATCATCTCCTTCACAACAAAACCAGTCATCCCTTCCTGTTATTCCTTCAGCTGATAGGTTGGGTAGATACAGAGGTAAAAGACCTCTGTCACATGTCCAGCAGGTGCAGCGTAATATACAGGCTCTTCGTGATAATTGGAATGCTCTGAGAAGTGGCTCCATGAAGTTTCATTCCAATTCAGTTCAAACTGATGGTGGCTTAGGTTGTCATGAACTAAACTCTGGTTCCATGTCACGTGGCAAATCAGATGAACCGCATTCTATGACTTCCACGAGCAATCAACAGTCCTGTGTCCGAAGTGGTAATTCTAGAGGCACATTGAGTGAGAGAAGCATGAAAGATGTCGAGAAGGCTTGGAAAATGATGGACAAGGCAAAGAAGATTCAAGGTACTCGTCAAAGAACCACTAGGCAGTAG 1005 0.4965 MKMSSGSASEEFFPNKRLRTEPPNADGGGDDQPVCCGICLAGRGASIAGEIDCCSHYFCFPCIMEWAKHESRCPICRQRFSNVRRPPKQGVLSFSRDVKVPIRDQVYHPYGNMTTGPADSHVEAKCSICHGVTDENLMLLCDLCNTAAHTYCAGLGYTVPEGDWFCYDCAISRETNADEESEQQQSVVLSARRTIASSPSQQNQSSLPVIPSADRLGRYRGKRPLSHVQQVQRNIQALRDNWNALRSGSMKFHSNSVQTDGGLGCHELNSGSMSRGKSDEPHSMTSTSNQQSCVRSGNSRGTLSERSMKDVEKAWKMMDKAKKIQGTRQRTTRQ* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1828 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 100 IPR013083 -
Dod05g1828 334 ProSiteProfiles Zinc finger PHD-type profile. 123 172 IPR019787 -
Dod05g1828 334 ProSitePatterns Zinc finger RING-type signature. 54 63 IPR017907 -
Dod05g1828 334 PANTHER HISTONE ACETYLTRANSFERASE 215 328 - -
Dod05g1828 334 PANTHER HISTONE ACETYLTRANSFERASE 30 199 - -
Dod05g1828 334 MobiDBLite consensus disorder prediction 305 326 - -
Dod05g1828 334 SMART ring_2 36 76 IPR001841 -
Dod05g1828 334 SMART ring_2 126 169 IPR001841 -
Dod05g1828 334 SMART PHD_3 125 170 IPR001965 -
Dod05g1828 334 ProSiteProfiles Zinc finger RING-type profile. 36 77 IPR001841 -
Dod05g1828 334 SUPERFAMILY RING/U-box 31 88 - -
Dod05g1828 334 MobiDBLite consensus disorder prediction 1 28 - -
Dod05g1828 334 Pfam PHD-finger 126 170 IPR019787 -
Dod05g1828 334 SUPERFAMILY FYVE/PHD zinc finger 119 174 IPR011011 -
Dod05g1828 334 PANTHER PHD-FINGER FAMILY PROTEIN 215 328 - -
Dod05g1828 334 PANTHER PHD-FINGER FAMILY PROTEIN 30 199 - -
Dod05g1828 334 MobiDBLite consensus disorder prediction 253 334 - -
Dod05g1828 334 Pfam Ring finger domain 36 77 IPR001841 -
Dod05g1828 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 195 IPR013083 -
Dod05g1828 334 MobiDBLite consensus disorder prediction 253 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1828 Dod-Chr5 43831634 43833928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1828 94 173 C2H2 Transcription Factor Family AT3G01460 32.099 2.09e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod05g1828 PHD 2.1e-09 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1828 05 43831634 43833928 Dod05g1828 05 43831634 43833928 ECH