Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1827 ATGGAGCTTCCTCAAGCGCGTCCCTTTGGAACCGAAGGAAGAAAACCTACGCATGACTTTCTGTCACTCTACAGTAATTCGACTGCCCAACAAGATCCAAGGCCACCTCCTCAAGGAAGCTACCTCAAGACCCATGATTTCCTGCGGGTAGAAACGAAAGCCAGTGCAAAGGAAGAAGCCACAGATGAGATATCATCGGCGGTTGAAAAGCTACCGCCTCCAGCACCACCGCCTTCTGTTGAGCACCTCTTACCTGGAGGAATTGGAACTTATAGTATTAGCCACATTTCTTATGTTAATAATAATCAAAGGGTTCCAAAGCCAGAGGCATCCCTTTTCACTGTGCGTCAAGCAACTAGCACGGATAGAAATGATGACAACTCCAACTGCAGCTCTTATACTTCAAGTGGTTTCACTTTGTGGGAAGAGTCTGCAGTTAAGAAGGGAAAGACAGGGAAGGAGAATAACGTGAGCGAGAAGCCCGTTCTAGGAGAGACGGAGTCTGCAAAACAAGGGCAGTGGACGTTGACGGAGCGAACATCACAGTCGTTTTCTAACAATCGTCACAACAGCTTTAACTCTCGCTCTTCCTCTCAGACAATTGGGCATAAGAACCAGAGTTTTATGGAAATGATGAAGTCCGCAAAGGATTGTATCCAGGATGAAGAGCTAGAAAACGAAGAAACATTTTTTTTTAAGAAAGAATCCGTGAACACCCAAAGAGAATTAAGGGTGAAAGTGGATGGAAAGGGTACTGATCAAAAGCCAAACACACCAAGATCAAAACATTCTGCAACAGAGCAGCGGAGAAGGAGCAAAATTAATGACAGATTCCAGATGCTAAGAGAGCTCATTCCACACAGTGACCAGAAGAGAGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTATATTCATTTTTTACAAGAGAAGGTGCACAAGTATGAAGGTTCGTTCCAGGGGTGGAATCACGAGCCAGAAAAATTAATGCCTTGGAAAAATAATGACAGGCCAGCAGAAAGTTTTGAACCTCGTGGTACAAATAGTGGTGGGTCAGGCCCATCTCCAACATCGCTGTTTGCTTCAAAGATTGACGAGAAAACCATCACCGTCTCCCCAACAATTCCTGGGAGTACTCGGAATGTAGAATCTGGCTTGAGCACAGCGGCTACATTTAAGACAATGGATCATCATCCTGGAATAACGAACAAGGCTTTTCCAATTCCTATTTCTTCACAGCCAAATTTCTTCACTCCTACCCAAAGCAGTTGTCCGGGCGGAGTGTCTCAGGTTACACACAGACTGGCATCTGATGCAGAGAATGGCATATATCAACCCTCAGTGGAAGGTCAGACTTTGACTGCCGCTAGTGAAAAGCTGAAAGAGAAAGAGCTCACTATTGAAGGTGGTGCCATCAGCATATCAAGTGTGTACTCAAAGGGAGTTCCGGAGTGGATTTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAGCAAGCAAACATCAGATCAACCGTGCCAATGCCAATGTGTGGCGTTAAGGATGATGAAGTTCCTTCCAATAATCGAAGGTTGGTGCGCTCTAGAGTTGCCAGCTCTGATAAGTCTGACCAAGCAGTAA 1626 0.4514 MELPQARPFGTEGRKPTHDFLSLYSNSTAQQDPRPPPQGSYLKTHDFLRVETKASAKEEATDEISSAVEKLPPPAPPPSVEHLLPGGIGTYSISHISYVNNNQRVPKPEASLFTVRQATSTDRNDDNSNCSSYTSSGFTLWEESAVKKGKTGKENNVSEKPVLGETESAKQGQWTLTERTSQSFSNNRHNSFNSRSSSQTIGHKNQSFMEMMKSAKDCIQDEELENEETFFFKKESVNTQRELRVKVDGKGTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNHEPEKLMPWKNNDRPAESFEPRGTNSGGSGPSPTSLFASKIDEKTITVSPTIPGSTRNVESGLSTAATFKTMDHHPGITNKAFPIPISSQPNFFTPTQSSCPGGVSQVTHRLASDAENGIYQPSVEGQTLTAASEKLKEKELTIEGGAISISSVYSKGVPEWICHRLASQCKLNLVSKQTSDQPCQCQCVALRMMKFLPIIEGWCALELPALISLTKQ* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1827 541 MobiDBLite consensus disorder prediction 168 201 - -
Dod05g1827 541 MobiDBLite consensus disorder prediction 148 201 - -
Dod05g1827 541 SMART finulus 264 314 IPR011598 GO:0046983
Dod05g1827 541 Pfam Helix-loop-helix DNA-binding domain 260 309 IPR011598 GO:0046983
Dod05g1827 541 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 330 IPR036638 GO:0046983
Dod05g1827 541 Gene3D - 256 329 IPR036638 GO:0046983
Dod05g1827 541 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 308 IPR011598 GO:0046983
Dod05g1827 541 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 482 IPR044295 GO:0003700|GO:0006351|GO:0046983
Dod05g1827 541 MobiDBLite consensus disorder prediction 1 78 - -
Dod05g1827 541 MobiDBLite consensus disorder prediction 330 365 - -
Dod05g1827 541 MobiDBLite consensus disorder prediction 243 274 - -
Dod05g1827 541 PANTHER TRANSCRIPTION FACTOR BIM1 1 482 - -
Dod05g1827 541 MobiDBLite consensus disorder prediction 20 37 - -
Dod05g1827 541 CDD bHLH_AtBIM_like 257 332 - -
Dod05g1827 541 MobiDBLite consensus disorder prediction 341 365 - -
Dod05g1827 541 MobiDBLite consensus disorder prediction 46 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1827 Dod-Chr5 43797012 43807033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1827 1 482 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 48.713 4.84e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod05g1827 HLH 4.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1827 - - adu:107468970 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1827 05 43797012 43807033 Dod05g1827 05 43797012 43807033 ECH