LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod05g1816	ATGGGGAGGGGAAGAGTGCAATTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTGACTTTCTCCAAGAGAAGGTCTGGTCTGCTCAAGAAAGCAAACGAGATCTCAGTGCTTTGCGATGCTGAAGTGGCTCTCATAGTCTTCTCCACCAAAGGCAAGCTTTTCGAGTACTCCAGCGACCCCTGTATGGAAAGAATTCTGGAACGGTACGAGAGATATTCATATGCTGAGAGGCAGCTCGTTGGAAATGACCTGGCATCAAATGAGAACTGGGTTCTAGAACACGCAAAGCTCAAGGCTAGGGTGGAAGTTCTTCAGAGAAATCAAAGGAATTTCATGGGGGAAGATCTAGACAGCCTGAGCCTCAAAGAGCTTCAGAATTTGGAACACCAACTTGATTCGTCTCTCAAGCACATTAGATCACGAAAGAACCAACTCATGTATGAATCTATTTCAGAGCTTCAGAAAAAGGATAAGTCACTCCAGGAACAAAACAACTTGCTCGCCAAGCAGATTAAGGAAAAGGAGAAGGCGATGGCCGAACAGGAGCAAGGTGGGATGCAAAGTGGCGTGGATGTGTCCTCTGCCCTGGTAACTCAACCGATGGAGTCCTTGAATATTGGAGGCACCCCACAAGCGCCGGTAGGTGATGGATTAGGAGATAATGAAGGAACTCCAACACAATCTCGAGCTAATAACCTTCTTCCCCCTTGGATGCTTCGTCCTATAAATGAATAG	738	0.4661	MGRGRVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAERQLVGNDLASNENWVLEHAKLKARVEVLQRNQRNFMGEDLDSLSLKELQNLEHQLDSSLKHIRSRKNQLMYESISELQKKDKSLQEQNNLLAKQIKEKEKAMAEQEQGGMQSGVDVSSALVTQPMESLNIGGTPQAPVGDGLGDNEGTPTQSRANNLLPPWMLRPINE*	246

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod05g1816	245	Pfam	K-box region	87	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Dod05g1816	245	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Dod05g1816	245	Gene3D	-	13	84	IPR036879	GO:0003677\|GO:0046983
	Dod05g1816	245	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG	1	231	-	-
	Dod05g1816	245	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Dod05g1816	245	CDD	MADS_MEF2_like	2	79	IPR033896	GO:0000977\|GO:0045944
	Dod05g1816	245	Coils	Coil	88	108	-	-
	Dod05g1816	245	ProSiteProfiles	K-box domain profile.	88	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Dod05g1816	245	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	231	-	-
	Dod05g1816	245	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Dod05g1816	245	SUPERFAMILY	SRF-like	2	92	IPR036879	GO:0003677\|GO:0046983
	Dod05g1816	245	MobiDBLite	consensus disorder prediction	204	245	-	-
	Dod05g1816	245	Coils	Coil	151	185	-	-
	Dod05g1816	245	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Dod05g1816	245	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Dod05g1816	245	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Dod05g1816	245	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod05g1816	Dod-Chr5	43677452	43685362	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod05g1816	1	243	MADS-box Gene Family	AT1G26310	55.814	7.38e-91	266

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Dod05g1816		K-box	1e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod05g1816	K09264		K09260	gmx:100784742	357.066

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod01g0268	01	5046808	5057016	Dod05g1816	05	43677452	43685362	ECH
	Dod05g1816	05	43677452	43685362	Dod05g1816	05	43677452	43685362	ECH