Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1815 ATGGGAAGGGGTAAGGTTGAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTCACATTTGCAAAGAGAAGAAATGGGCTGCTCAAGAAGGCTTATGAGCTCTCGGTCCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCAGCAGCACCTCCAGCATGATGAAATCTCTGGAGAAGTACCGGAAGTATAGTTATAGTGCACTCGAGACCGGCAGACCAATCAATGATATGCAGAACAACTACCAGGAATATGTGAGACTAAAAGCCAAGGTAGAAGTCCTGCAACGCTCACAGAGGAACTTACTGGGGGAGGATCTTGCCCAAATGAATACAACTGAGCTGGAGCATCTTGAGAATCAACTAGAGGCAACACTGAAGAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTGCTGATCTTCACAACCGGGAAATAGCGCTCGTTGAAACCAATAATGCGTTAAGGAGTAAGTTGGAAGAAACTAGTTACTCACAAGTTCAAGTTAGACTGGCTTTGGACACTCTGGCTCCGAATGCCCACTACAACCGGTTTCCTCCTCAATCAGAAGGCTTTTTTCAACCTGTCGGAGTTAATCCTAGCTTGCAAATTGGATACAACCAGACGGGTCCCGAACCTGATGATGCAAACGTTGCAGCTTCATCCTTAAGTATGCAAGGATTCGTCTCTGGGTGGATGCTTTGA 741 0.4615 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMKSLEKYRKYSYSALETGRPINDMQNNYQEYVRLKAKVEVLQRSQRNLLGEDLAQMNTTELEHLENQLEATLKNIRSTKTQFMLDQLADLHNREIALVETNNALRSKLEETSYSQVQVRLALDTLAPNAHYNRFPPQSEGFFQPVGVNPSLQIGYNQTGPEPDDANVAASSLSMQGFVSGWML* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1815 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dod05g1815 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod05g1815 246 Coils Coil 117 144 - -
Dod05g1815 246 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Dod05g1815 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod05g1815 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod05g1815 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod05g1815 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 222 - -
Dod05g1815 246 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod05g1815 246 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 222 - -
Dod05g1815 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod05g1815 246 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Dod05g1815 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod05g1815 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod05g1815 246 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1815 Dod-Chr5 43648959 43653822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1815 1 246 MADS-box Gene Family AT5G15800 53.053 1.56e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod05g1815 K-box 1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1815 K09264 K09260 gmx:100797819 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0267 01 5026434 5032741 Dod05g1815 05 43648959 43653822 ECH
Dod05g1815 05 43648959 43653822 Dod05g1815 05 43648959 43653822 ECH