Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1813 ATGGAATCTTGGGGCTATGTTTCTGAAGAAAAAGGGTATGTCTCCAACGACACACTCTCCCCTCCTAGTAGTACCCTTGGAAGAAGCAAAAACTCCTTCTTGGGGTGGGAACTGAACACCCCATGTAGCTTTTCAAACGACATGTTGGGTCAGCAAAGCATTGAGGAGGGTCAAGGTTTTGAGGAATTGGGTATTCCTGAATTGTTTGGGAAACAATCGCCTCATGATAATATGATTGGCAGAATCACTAGCACTAACAATAACACCACTATTGTGGCTGCCCCCAATGCTTTTCCTGCAAGAGGGGACTCCAAATCCAAGCTTTCAAACTCTGTTGTTGTGGACTCTAATGGCCGGGATTCCCTCATTGATTTGAAGCTTGGGCGATTTGCTGATCATGGAGATGCCATGGATAAGGTATTCTCCAAAGGAACACCTATGTTGTCTTCTTCTGAGTCATCAACTGCTCCCAAGAGACTGAGAGCTTCGGGTTTGCACTCACAGACTGCATACTGCCAAGTCTATGGTTGTAACAAGGATCTCAGCTCCTGCAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTTCCACAGTCATAGTGAATGGCACTGAGCAGAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGCAAGCGCAGCTGTCGTAAACGCCTTGCAGGCCATAATGAGCGTAGAAGAAAACCACAAGCAGGTATTCACTCTGGAAAGGCCGGGAGATTGCTTCAGCCATGTGGTGATAGCAGATTCCATGGGACCATGCTAACATCAGCATCTTTTATTTGCTCAGAGATGCTCCCCAGTGGTGTCATACGTTCTGAGAAATGTGGAATGAGTGGCTTCTGGAAACCTACAAAAGCAGAACATGGGACTGGTTTTAGGTATCTTTCTTCTATGCCTATGTCCAATGGACATCCTCAGTCAAGATCTCTTTTCCCTTCATACAACGAAGTCGAAAAACAGTTTCCATTTCTTCATGAAAATAGTGCTTCAACCACTAGAGGAAGCATCTTCTGTGAAAGCAACAGCCAATACAAGCATGTCCATGGGGCCCAAAATTCTGGGTCAGTATTCCAGGACACCTCCTTAGGATGTGAGGACTTCAACATCTTTGACACAGCATCAACTGTTCAAGGGTTATCGGGAATTTCAGACACTTGTGCTCTCTCTCTTCTGTCATCGCAATCCCAGAACTCTTCAAGCCAATCGTCAGGAATTCCCTTGGCTCACCCCTTGGTTCTTGCAAGCGGCCGCAGCCATCCCCACCGCGTGAGTCAGGTCTCTGAAAAGATAGGAATAAGCTCACGGACTTCTTCAGGCCAAGTGTCGGATAGGTTTCCATTGGAACTGAATCCTGTGAGTGGAAGTCAGCTTACTCCTATATTGATACCGGACAACAGTGATACTGTAAACTTTGAAATGGCTGGTGGGATTTTCCAAGGTTCAGATTATGTGAATGTGAAGGATCGTCTTTCCTGTGAAGATGTTGCAACAATTGATTTGCTGCAGCTTTCATCGCAGCTGCAGCGAGTTGATTATCAGAGGCAATCCTTGCAGGCAAAGCAAGAAAATGATTCTTCCTGCACTCTCCGGATTACTTGA 1653 0.458 MESWGYVSEEKGYVSNDTLSPPSSTLGRSKNSFLGWELNTPCSFSNDMLGQQSIEEGQGFEELGIPELFGKQSPHDNMIGRITSTNNNTTIVAAPNAFPARGDSKSKLSNSVVVDSNGRDSLIDLKLGRFADHGDAMDKVFSKGTPMLSSSESSTAPKRLRASGLHSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTSTVIVNGTEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQAGIHSGKAGRLLQPCGDSRFHGTMLTSASFICSEMLPSGVIRSEKCGMSGFWKPTKAEHGTGFRYLSSMPMSNGHPQSRSLFPSYNEVEKQFPFLHENSASTTRGSIFCESNSQYKHVHGAQNSGSVFQDTSLGCEDFNIFDTASTVQGLSGISDTCALSLLSSQSQNSSSQSSGIPLAHPLVLASGRSHPHRVSQVSEKIGISSRTSSGQVSDRFPLELNPVSGSQLTPILIPDNSDTVNFEMAGGIFQGSDYVNVKDRLSCEDVATIDLLQLSSQLQRVDYQRQSLQAKQENDSSCTLRIT* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1813 550 MobiDBLite consensus disorder prediction 236 255 - -
Dod05g1813 550 Gene3D - 163 233 IPR036893 GO:0003677|GO:0005634
Dod05g1813 550 PANTHER 1 PROTEIN, PUTATIVE-RELATED 42 550 - -
Dod05g1813 550 SUPERFAMILY SBT domain 170 250 IPR036893 GO:0003677|GO:0005634
Dod05g1813 550 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Dod05g1813 550 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 550 IPR044817 GO:0003677
Dod05g1813 550 Pfam SBP domain 172 245 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1813 Dod-Chr5 43608402 43611464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1813 123 288 SBP-box Gene Family AT1G69170 56.024 1.01e-51 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod05g1813 SBP 6.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1813 - - gmx:100817547 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1813 05 43608402 43611464 Dod09g0504 09 7664761 7670096 ECH
Dod05g1813 05 43608402 43611464 Dod05g1813 05 43608402 43611464 ECH