Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1809 ATGCGGGGCTTAAGAAGTGAAAGAGCTCCTCTCTTAGAGGCTGAGCGCGGCGGAAGGGGAAAGAGGGATGATGCCTCAGCAGAACAACCTTCAGACCTTGAGCATGGTGATGCTGTGCCGGCTGCCAACGTGGGATTCTTTAGAGTATTTTCACTTGCAAAGCCTGAGGCTGGAAACTTGGTGATTGGTACAGTGGCTTTGTTGATTGCAGCGACATCAAGTATCTTAGTTCAAAAGTATGGGGGGAAGATAATTGACATTGTCTCAGGAGATCTCCGAACTCCTGAAGAGAAAGATAAAGCTTTGAATGCTGTGAGGAGCACCATAGTGGAAATCTTTCTAATTGTTATTATTGGTTCAGTTTGCACAGCACTTCGAGCTTGGCTTTTCTCTTCTTCTAGTGAAAGAGTTGTTGCACGTCTGAGGAAGAATTTGTTTAGTCACCTTGTAAGCCAGGAGATTGCCTTCTTTGATGTTACTCGAACTGGGGAACTTTTAAGTAGGCTGTCTGAAGATACACAGATCATAAAGAATGCTGCAACTACCAATCTTTCTGAAGCCCTCAGAAACTTATCAACTGTACTTATTGGTCTCAGCTTTATGTTTGCAACGTCATGGAAGTTAACATTGTTGGCTTTGTGCGTTGTGCCTGTTATTTCTGTTGCTGTTCGTAAATTTGGGCGTTTCTTGCGTGAACTCTCCCATAAAACTCAAGCTGCAGCTGCAGTAGCTGCTTCAATTGCTGAGGAATCCTTTGGTGCTATAAGAACAGTAAGATCTTTTGCCCAAGAAGATTATGAAACATCACGTTACTCTGAGAAAGTTGAGGAGACGCTCAAGCTTGGACTTAAGCAAGCTAAAGTTGTTGGACTCTTTTCCGGAGGCCTTAATGCGGCATCTACGCTTTCAGTTATTGTTGTGGTTATATATGGAGCTAATTTGACAATCAAGGGTTCCATGTCCTCCGGTGATCTCACATCTTTCATTCTTTATAGTCTCTCAGTGGGATCTTCTATATCTGGTCTGTCGGGATTGTATACAGTAGTTATGAAAGCTGCTGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTGCCTCATCCATGCCTAAGCCAGGAAACAAGTGTCCTCTTGGTGATCAAGATGGGGAAGTGGAACTACATGATGTATGGTTTTCCTATCCATCACGCCCTAATCACATGGTGCTCAAGGGCATTACATTAAAACTTCTTCCTGGCTCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGACAACAATAGCAAACTTAATTGAAAGATTTTATGACCCATCGAAGGGAAAGATTCTGCTGAATGGGGTTCCACTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTATTCAACTGTTCCATAGAGGAGAATATAGCCTATGGATTTGACGGCAAAGTTGATGAAGTTGATATAGAAAATGCAGCTAAAATGGCCAATGCACACGAATTCATCTCCAAGTTCCCCGAAAAATACAAAACCTTTGTTGGAGAACGTGGTGTAAGGCTTTCAGGAGGGCAGAAACAGAGGATAGCAATTGCTAGAGCCCTGCTCATGGACCCAAAAATTCTCCTCCTGGATGAAGCCACCAGTGCCTTAGATGCTGAAAGCGAATACCTGGTGCAGGTGAGTTAA 1701 0.4345 MRGLRSERAPLLEAERGGRGKRDDASAEQPSDLEHGDAVPAANVGFFRVFSLAKPEAGNLVIGTVALLIAATSSILVQKYGGKIIDIVSGDLRTPEEKDKALNAVRSTIVEIFLIVIIGSVCTALRAWLFSSSSERVVARLRKNLFSHLVSQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTVLIGLSFMFATSWKLTLLALCVVPVISVAVRKFGRFLRELSHKTQAAAAVAASIAEESFGAIRTVRSFAQEDYETSRYSEKVEETLKLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGSMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRASSMPKPGNKCPLGDQDGEVELHDVWFSYPSRPNHMVLKGITLKLLPGSKVALVGPSGGGKTTIANLIERFYDPSKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVDEVDIENAAKMANAHEFISKFPEKYKTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQVS* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1809 566 Pfam ABC transporter transmembrane region 60 333 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod05g1809 566 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 351 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod05g1809 566 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 3 564 IPR039421 -
Dod05g1809 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 564 IPR027417 -
Dod05g1809 566 CDD ABC_6TM_AtABCB27_like 63 359 - -
Dod05g1809 566 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 3 564 - -
Dod05g1809 566 Pfam ABC transporter 403 553 IPR003439 GO:0005524
Dod05g1809 566 ProSitePatterns ABC transporters family signature. 525 539 IPR017871 GO:0005524
Dod05g1809 566 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 565 IPR003439 GO:0005524
Dod05g1809 566 Gene3D ABC transporter type 1, transmembrane domain 112 382 IPR036640 GO:0005524|GO:0016021
Dod05g1809 566 Gene3D - 383 564 IPR027417 -
Dod05g1809 566 SUPERFAMILY ABC transporter transmembrane region 48 365 IPR036640 GO:0005524|GO:0016021
Dod05g1809 566 SMART AAA_5 412 566 IPR003593 -
Dod05g1809 566 MobiDBLite consensus disorder prediction 1 36 - -
Dod05g1809 566 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1809 Dod-Chr5 43529612 43534967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1809 113 564 Calmodulin-binding Proteins AT2G36910 37.773 1.23e-81 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1809 - - var:108320153 975.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1809 05 43529612 43534967 Dod05g1809 05 43529612 43534967 ECH