Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1799 ATGGCGAAATCAGTGAGCCCAGACGCCATCTCCACGCTGCTTGCAAACCCCTCCCCCGATTCCTCCTCAGATCTCCCCGACATCATCGTACAAGTCCTCGATCTCAAGCAAAGCGGCAACCGATACATGTTTAGTGCAAGTGATGGTAAAAAGAAGCTGAGGGCGATTCTGCCTTCGAATCAGTACTCAGAGGTACTTTCCGGGAAGATTCAGAACCTAGGTCTTATCCGCATCCTCGATTACACTCTCAACGACATCCCTAACAAATCTGAAAAGTATCTTATTGTTACCAAGTGTGAACCTGTCTCCCCTGCTCTCGAAGCAGAGATAAAGAGCGAGGAATGTGGCATTGATCTGAAGAAGCCGAAGCAAGAGGATGAGGTCAAGAGCGTGGTGGTGAAGAGTGAAGGTGGTGCTGCCGGGATTCTGTTGAAGCCGAAGCAGGAAATGGTGGCAAAATCTGCTGCTCAGATTGTTCACGAACAAAATAGAAATGTTGCTCCTGCTGCAAGAATGGCCATGACGCGCAGGGTGCATCCTCTTGTTTCATTGAATCCTTATCAGGGCAATTGGACTATTAAGGTTCGTGTTACCAGCAAAGGGAACATGCGCACCTATAAGAATGCTCGGGGAGAAGGCTGTGTCTTCAACGTGGAGTTGACAGATGAAGATGGTACGGAGGTTCAAGCAACCATGTTTAATGATGCGGCAAGAAAGTTTTATGATAAGTTTGTTTTAGGAAAGGTTTACTACATCTCAAAGGGGACTTTGAAAGTCGCTAACAAGCAGTTCAAAACTGTGCAAAATGATTATGAAATGACACTGAATGAGAATTCTGAGGTGGAAGAGGCTGCCAATGAAGCAGATGTTGTTGGAGTTGTTCAGAATGTGTCTACAACTATGAGCATTAGAAGGAAGAGCAACAATGAGAACATTCCAAAGCGTGACATTACTATTGCTGATGAAACGAAAAAGACCGTAGTTGTGTCCCTGTGGAATGATCTTGCCACGAACATGGGGCAAGAGTTGCTGGACATTGCTGATAAATCTCCCGTAGTTGCTATCAAGTCCCTCAGGGTTGGAGATTTCCAAGGTGTTTCTTTATCAACGATAAGCAGAAGTGTAGTTATGATTAATCCAGATATACCTGAAGCAAAGAAACTCAGATGCTGGTATGATTCTGAAGGTAAGGATGCTGCAATGGCCTCTGTTGGCTCTGGCTCAAGTCCAGCATCCATGAATGGGAGTAGATCAGTGTACTCTGACCGTGTTTCACTTGCTCACATAACCTCTAACCAATCCTTGGGGGAGGACAAACCTGCATTTTTCAGTGTGAGAGGATATATAAGCTTCATAAAGCCTGAGCAAGCAATGTGGTACCGTGCTTGCAAAACTTGCAACAAGAAAGTTACCGAGAGTATTGGTGCTGGGTATTGGTGTGAAGGTTGCCAGAAAAATGATGAACAGTGCAGTTTAAGATATATTATGGTTGTTAAAGTTGCTGATGAAAGTGGGGAGGCTTATGTCTCAGTCTTCAATGAGGAGGCTGAGAAGATTGTTGGGTGCTCTGCTGATGATCTGGACAGCCTAAAATCTCAGGAGGTAGAAGATAATCCTTATCAACTGAAACTGAAACAAGCTACTTGGGTTCCGCATCTTTTCCGGGTTAGTGTGACTCAAAATGAGTATAATAACGAGAAGCGGCAAAGGATTACAGCCCGGGCAGTAGTTCCTGTTGACTTTGCTGCTGAGTCAAGAATTCTCCTGGAAGAAATATCAAAGATGAGAGCTTCTCAATAA 1800 0.4467 MAKSVSPDAISTLLANPSPDSSSDLPDIIVQVLDLKQSGNRYMFSASDGKKKLRAILPSNQYSEVLSGKIQNLGLIRILDYTLNDIPNKSEKYLIVTKCEPVSPALEAEIKSEECGIDLKKPKQEDEVKSVVVKSEGGAAGILLKPKQEMVAKSAAQIVHEQNRNVAPAARMAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTEVQATMFNDAARKFYDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEAANEADVVGVVQNVSTTMSIRRKSNNENIPKRDITIADETKKTVVVSLWNDLATNMGQELLDIADKSPVVAIKSLRVGDFQGVSLSTISRSVVMINPDIPEAKKLRCWYDSEGKDAAMASVGSGSSPASMNGSRSVYSDRVSLAHITSNQSLGEDKPAFFSVRGYISFIKPEQAMWYRACKTCNKKVTESIGAGYWCEGCQKNDEQCSLRYIMVVKVADESGEAYVSVFNEEAEKIVGCSADDLDSLKSQEVEDNPYQLKLKQATWVPHLFRVSVTQNEYNNEKRQRITARAVVPVDFAAESRILLEEISKMRASQ* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1799 599 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Dod05g1799 599 SUPERFAMILY Nucleic acid-binding proteins 288 397 IPR012340 -
Dod05g1799 599 CDD RPA1_DBD_B 289 393 - -
Dod05g1799 599 Pfam Replication protein A OB domain 283 379 IPR031657 -
Dod05g1799 599 Gene3D - 405 595 IPR012340 -
Dod05g1799 599 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 289 593 - -
Dod05g1799 599 CDD RPA1_DBD_A 180 283 - -
Dod05g1799 599 Pfam Replication factor-A C terminal domain 442 587 IPR013955 -
Dod05g1799 599 Gene3D - 284 394 IPR012340 -
Dod05g1799 599 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Dod05g1799 599 SUPERFAMILY Nucleic acid-binding proteins 178 286 IPR012340 -
Dod05g1799 599 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Dod05g1799 599 PANTHER REPLICATION FACTOR A 1, RFA1 289 593 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dod05g1799 599 Gene3D - 177 283 IPR012340 -
Dod05g1799 599 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 290 - -
Dod05g1799 599 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 288 594 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dod05g1799 599 CDD RPA1_DBD_C 429 594 IPR013955 -
Dod05g1799 599 SUPERFAMILY Nucleic acid-binding proteins 421 595 IPR012340 -
Dod05g1799 599 Gene3D - 4 112 IPR012340 -
Dod05g1799 599 PANTHER REPLICATION FACTOR A 1, RFA1 5 290 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1799 Dod-Chr5 43405184 43414359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1799 1 599 Core DNA Replication Machinery Family AT5G08020 66.773 0.0 873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1799 K07466 - qsu:112017680 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1799 05 43405184 43414359 Dod05g1799 05 43405184 43414359 ECH