Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1798 ATGGCAAAATCAGTGAGTCAAGACGCCATTTCCACGCTGCTTGCAAACCCCTCCCCCGATTCCTCTTCAGATCTCCCAGACATCGTTGTGCAAGTCCTCGATCTCAAGCAAAGCGGCAACAGATACTTGTTTAGTGCTAGTGATGGGAAAATGAAGCTGAGGGCGATTCTGCCTTCGAATCAGTACTCTGAGGTACTCTCTGGAAAGATTCAGAACCTAGGTCTTATTCGCATCCTCGATTACACTCTCAACGACATCCCTAACAAATCTGACAAGTATCTTATTGTAACCAAGTGTGAACCTGTCTCTCCTGCTCTCGAAGCAGAGATAAAGAGCGAGGAATGTGGCATTGTTCTGAAGAAACAGAAGCAAGAGGATGAGGTCAAGAGTGAAGGTGGTGCTGCCGGGATCCTGTTGAAGCCGAAGCAGGAAGTTGTGGTGGCAAAATCTGCTGCTCAGATCGTGCACGAACAACAACATAGAAATGTTGCTCCTTCTGCAAGAATGGCCATGACGCGCAGGGTGCGTCCTCTTGTTTCATTGAATCCTTATCAGGGCAATTGGACTATTAAGGTTAGTGTTACCAGCAAAGGGAGCATGCGGACCTATAAGAATGCTCGAGGAGAAGGATGTGTCTTCAACGTGGAGTTGACAGATGGAGATGGTACGCAGATTCAAGCAACCATGTTTAATGGTGCTGCAAGGAAGTTTTATGACAAGTTTGTTCTGGGAAAGGTTTACTACATCTCAAAGGGGACTTTGAAAGTTGCTAACAAACAGTTCAAGACTGTGCAGAATGACTATGAAATGACACTCAATGAGAATTCTGAGGTAGAAGAAGTGGCCAATGAAGCAGGTTTTGTCCCAGAAACAAAATTCAACTTTGTTCCGATAGATCAGTTGGGTCCTCATGTCAACAAGACCGATCTTGTTGATGTCATCGGAGTTGTTCAGAATGTGTCTTCAACTATGAGCATTAGAAGGAAGAGTGATAATGAGACTATTCCAAAGCGTGACATTACTATTGCTGATGAAACGAAGAAGACAGTAGTCGTGTCCCTGTGGAATGAGCTCGCAACTAACATTGGGCAAGAGTTGCTGGACATTGCTGATAAATCTCCAGTAGTTGCAATCAAGTCACTAAGGGTTGGGGAGTTCCAAGGTGTTTCTTTGTCAACTATAAGCAAAAGTGCAGTTATGATAAATCCAGATGTACCTGAAGCAAAGAAGCTCAGATGCTGGTATGATTCTGAAGGTAAGGATGCTGCAATGGCCTCTGTTGGCTCTAGCTCAAGTACATCATCAATGAATGGAAGTAGATCAGTGTACTCTGATCGTGTTTCACTTGCTCACATAACCTCAAACCAGTCCTTGGGGGAGGATAAGCCTGTATTTTTCAGCGTTAGAGGATACATAAGCTCCATAAGGCCTGAACAAGCAATGTGGTACCGTGCTTGCAAAACTTGCAACAAGAAAGTTACCGAGAGTATTGGTGGTGGGTATTGGTGCGAAGGTTGCCAGAAAAATGATGAACAATGCAGTTTAAGATATATCATGGTTGTTAGAGTTGCTGATGAAAGTGGGGAGGCTTATGTCTCAGTCTTCAATGAGGAAGCTGAGAAGATCGTTGGGTGCTCTGCTGAAGAACTAGACAGCCTGAAATCTCAGGAAGGAGAGGATAATCCTTATCAACTGAAGCTGAAACAAGCTACTTGGGTTCCACATCTTTTCCGGGTTAGTGTCAGTCAGAATGAGTATAATAATGAGAAGCGGCAAAGGATCACAGCCCGGGCAGTTGTTCCTGTTGACTTCGCTGCTGAGTCAAGAATTCTCCTGGAAGAAATATCAAAGATGAGAACTTCTCAATAA 1869 0.4425 MAKSVSQDAISTLLANPSPDSSSDLPDIVVQVLDLKQSGNRYLFSASDGKMKLRAILPSNQYSEVLSGKIQNLGLIRILDYTLNDIPNKSDKYLIVTKCEPVSPALEAEIKSEECGIVLKKQKQEDEVKSEGGAAGILLKPKQEVVVAKSAAQIVHEQQHRNVAPSARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGSMRTYKNARGEGCVFNVELTDGDGTQIQATMFNGAARKFYDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVANEAGFVPETKFNFVPIDQLGPHVNKTDLVDVIGVVQNVSSTMSIRRKSDNETIPKRDITIADETKKTVVVSLWNELATNIGQELLDIADKSPVVAIKSLRVGEFQGVSLSTISKSAVMINPDVPEAKKLRCWYDSEGKDAAMASVGSSSSTSSMNGSRSVYSDRVSLAHITSNQSLGEDKPVFFSVRGYISSIRPEQAMWYRACKTCNKKVTESIGGGYWCEGCQKNDEQCSLRYIMVVRVADESGEAYVSVFNEEAEKIVGCSAEELDSLKSQEGEDNPYQLKLKQATWVPHLFRVSVSQNEYNNEKRQRITARAVVPVDFAAESRILLEEISKMRTSQ* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1798 622 SUPERFAMILY Nucleic acid-binding proteins 444 618 IPR012340 -
Dod05g1798 622 PANTHER REPLICATION FACTOR A 1, RFA1 5 616 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dod05g1798 622 Pfam Replication protein A OB domain 304 402 IPR031657 -
Dod05g1798 622 CDD RPA1_DBD_C 452 617 IPR013955 -
Dod05g1798 622 Gene3D - 4 112 IPR012340 -
Dod05g1798 622 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 3 617 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dod05g1798 622 SUPERFAMILY Nucleic acid-binding proteins 293 420 IPR012340 -
Dod05g1798 622 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Dod05g1798 622 CDD RPA1_DBD_A 177 280 - -
Dod05g1798 622 Gene3D - 428 618 IPR012340 -
Dod05g1798 622 SUPERFAMILY Nucleic acid-binding proteins 1 105 IPR012340 -
Dod05g1798 622 Pfam Replication factor-A C terminal domain 465 610 IPR013955 -
Dod05g1798 622 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 616 - -
Dod05g1798 622 CDD RPA1_DBD_B 310 416 - -
Dod05g1798 622 Gene3D - 288 427 IPR012340 -
Dod05g1798 622 Gene3D - 174 283 IPR012340 -
Dod05g1798 622 SUPERFAMILY Nucleic acid-binding proteins 176 284 IPR012340 -
Dod05g1798 622 Pfam OB-fold nucleic acid binding domain 188 274 IPR004365 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1798 Dod-Chr5 43397664 43401009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1798 1 622 Core DNA Replication Machinery Family AT5G08020 69.823 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1798 K07466 - qsu:112017680 949.888