Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1795 ATGGCTTTCTTTGGTAGAATTGGGAATATACTGAGAAATGCAGCAAGCAAGCAGATTAGTTCGGAATTACGTTCATCCCCATCTGTTTTCCAGGCTATACGGTGCATGTCATCTGCTCCAAGTTCAAAACTGTTTATTGGAGGTGTTTCATATTCTACTGATGAGCAAAGTTTGAGGGAAGCTTTTTCAAGATATGGTGAAGTTATTGATGCAAGGATAATTATGGATCGTGAAACTGGTAGATCCAGAGGATTTGGCTTTGTTACTTACAGTTCAGTTGAGGAGGCATCAACTGCGATTCAAGCCTTGGATGGACAGGATCTTCATGGTCGCCGGGTTAGAGTAAATTATGCTAATGATAGGACCCGTGGATATGGTGGCGGTGGTGGTGGTTTTGGTGGTGGGTTTGGCAACACACCATATGGTGCTGGAGCTGGCTATGGAGGTGCTTATGGTAACTCTCCATATGGTGGTGCTTCAGGTGGTGGGGGTTATGGTGGCAATGTTGCTGGAGGTTATGGTGGAGGCGGCTATGGATCAGGTGGCGGTTATGGGGGCAGTGGTGGCTATGACAATAACTACTCTGCTCCTGATAGTTTTGGAACTAGCAACGCTGGTGGCAGTGGCGTGAATTATGGGAATGATGGTAACTTTGCAAGTGGAAACACTTATCCTGGTGGAAGTACTGGAGGCTATGGTGGTAACAGTGGGAATTTTGGTGTTGCTGGTGGTGATGGAGGCAGTGATAACTTTGGCAATGCCCCTGGTTTTGATGCTGCTGCTGGTGTTGGTAGTCATGAAACTTCTGCTGGTTTTGGTGGCAGTGACAATTATGTTGGTGCTGGTGGCAGCAGCAGGTTTGCTGATGGAAGTGGTGGATTGGACTATGGCAGCAGTGGCCAGCTGGATAACAAAGAAAGCAGCAATGTAGGTGACGATCTGGGAGGTTTTGAGGACTCATCAGAAGGAAATTACAGCGATGACAATGATGATACTGATAATTTTGCCAAAAGGGCTTGA 1020 0.4667 MAFFGRIGNILRNAASKQISSELRSSPSVFQAIRCMSSAPSSKLFIGGVSYSTDEQSLREAFSRYGEVIDARIIMDRETGRSRGFGFVTYSSVEEASTAIQALDGQDLHGRRVRVNYANDRTRGYGGGGGGFGGGFGNTPYGAGAGYGGAYGNSPYGGASGGGGYGGNVAGGYGGGGYGSGGGYGGSGGYDNNYSAPDSFGTSNAGGSGVNYGNDGNFASGNTYPGGSTGGYGGNSGNFGVAGGDGGSDNFGNAPGFDAAAGVGSHETSAGFGGSDNYVGAGGSSRFADGSGGLDYGSSGQLDNKESSNVGDDLGGFEDSSEGNYSDDNDDTDNFAKRA* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1795 339 CDD RRM_HP0827_like 43 119 - -
Dod05g1795 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Dod05g1795 339 SUPERFAMILY RNA-binding domain, RBD 39 150 IPR035979 GO:0003676
Dod05g1795 339 PRINTS Eggshell protein signature 126 141 - -
Dod05g1795 339 PRINTS Eggshell protein signature 181 199 - -
Dod05g1795 339 PRINTS Eggshell protein signature 38 54 - -
Dod05g1795 339 PRINTS Eggshell protein signature 151 161 - -
Dod05g1795 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Dod05g1795 339 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 338 - -
Dod05g1795 339 Gene3D - 13 137 IPR012677 -
Dod05g1795 339 SMART rrm1_1 43 116 IPR000504 GO:0003723
Dod05g1795 339 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 338 - -
Dod05g1795 339 MobiDBLite consensus disorder prediction 289 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1795 Dod-Chr5 43377208 43380045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1795 31 140 Eukaryotic Initiation Factors Gene Family AT1G71770 33.607 1.52e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1795 05 43377208 43380045 Dod05g1795 05 43377208 43380045 ECH