Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1778 ATGGAAGAAGATCAAGAACTGGTCATCATCAACACCAAGCACGTGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGCAGATCCTTGGGGGGCCACATGAGGTCTCATGTAACCAACTTGTCATCATCATCTGAACCTGATGAGAAAGAGAAGCTCAATTTCTCAACCACAAAGCCTTCATCATCATCTCATGAAGCTGGAACAAACAACAACAACAACAACAACAACAACACTGGCTATGGTTTGAGGGAGAACCCAAAGAAGACTTGGAGGATCGCGAATTCAACTAGTGGGGACACTGTGTTGATCCATGACAAGCTGTGCAAAGAGTGTGGCAAAGGGTTCCCATCTTGGAAGGCCTTGTTTGGTCACATGAAATGCCACTCCTCAGAGAAAGAGAGAGTTTCCAACAACAACAGCAGCTTACTGGAGGACCAAGATTCTTGGACCAACAACAATGATGCTAGCCATCACCTGAAGCTTGTGATGGATTCCCAATCTGACAATGAAGCAACTGCTCCAAGCAGAAGGAGAAGGTCAAAGAGGAGAACAAGAAGGTACATGGTTGCTTCTGCTACTTCTAATTCTGTTTCTTTTGCTGCCAACCCTTCTTCTTCTTCTCTCTCTGAGGTTGAGCAAGAGCAAGAAGAGTCCTCTGACAACAACTCTGGTCACAACTTTGAAGTTCGATCTTCTTCAGTGAGGACTAATCTAGTTACCAGAATTGATGGCAAGAACAAGCATACCCTCAATGAATCTGAGGTCAGAAAAGTGACTAAGCAAAATAACAAGAAGTGGGAATTTGGCAACTCGGTTTCCAAAGGGAAAAGTTCAGAGCTTTTTGGGATGAACAAAGCTGGATTTGCCATTAATGGGTTCATCAAGAGTGAAGCTGCATTGGATGATTCTGAAGCTGAAAATGGGAGGAGCAGAGTCAATGGAACAGAACCGGGTTTATCAAAATCACCAACTACTACTACTACTACTAACAAGTACAGTTCAATCAAAGCATCAAAGTTTAAGGATTCTGAATTGAAGTCAAATTCCCCCAAGAACTGTGTGAAAAGGCCTTCTTCAGAAGCTGAACTCAGCAAGAACTCTCATAAGAAGGGTAAGTTTGAGTGTACTACTTGCAACAAGATCTTCCACTCTTACCAAGCTCTTGGAGGACATAGAGCTAGTCACAAGAAGATCAAAGGGTGCTTTGCTTCAAGGAATGAGAGCAGTGAGAACAGCATCGAGACTGAACTCTCTCCTGACCCTGCGACAACTGAGAGCAGCAGGCTCATGAAGATTACCAGTGTTGAGAGTGAACAAGTGGTTGAACATGAAGCTGGTGGTTCTGGTTTTGATAATGAGGCAGGTACACCTCGGTAA 1377 0.4408 MEEDQELVIINTKHVCKFCSKSFPCGRSLGGHMRSHVTNLSSSSEPDEKEKLNFSTTKPSSSSHEAGTNNNNNNNNNTGYGLRENPKKTWRIANSTSGDTVLIHDKLCKECGKGFPSWKALFGHMKCHSSEKERVSNNNSSLLEDQDSWTNNNDASHHLKLVMDSQSDNEATAPSRRRRSKRRTRRYMVASATSNSVSFAANPSSSSLSEVEQEQEESSDNNSGHNFEVRSSSVRTNLVTRIDGKNKHTLNESEVRKVTKQNNKKWEFGNSVSKGKSSELFGMNKAGFAINGFIKSEAALDDSEAENGRSRVNGTEPGLSKSPTTTTTTNKYSSIKASKFKDSELKSNSPKNCVKRPSSEAELSKNSHKKGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASRNESSENSIETELSPDPATTESSRLMKITSVESEQVVEHEAGGSGFDNEAGTPR* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1778 458 ProSitePatterns Zinc finger C2H2 type domain signature. 16 36 IPR013087 -
Dod05g1778 458 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Dod05g1778 458 MobiDBLite consensus disorder prediction 130 261 - -
Dod05g1778 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 14 36 IPR013087 -
Dod05g1778 458 MobiDBLite consensus disorder prediction 405 458 - -
Dod05g1778 458 ProSitePatterns Zinc finger C2H2 type domain signature. 375 395 IPR013087 -
Dod05g1778 458 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 431 - -
Dod05g1778 458 SMART c2h2final6 106 128 IPR013087 -
Dod05g1778 458 SMART c2h2final6 14 36 IPR013087 -
Dod05g1778 458 SMART c2h2final6 373 395 IPR013087 -
Dod05g1778 458 MobiDBLite consensus disorder prediction 313 336 - -
Dod05g1778 458 MobiDBLite consensus disorder prediction 241 261 - -
Dod05g1778 458 MobiDBLite consensus disorder prediction 55 83 - -
Dod05g1778 458 Pfam C2H2-type zinc finger 373 397 - -
Dod05g1778 458 Pfam C2H2-type zinc finger 14 36 - -
Dod05g1778 458 Pfam C2H2-type zinc finger 108 130 - -
Dod05g1778 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 373 400 IPR013087 -
Dod05g1778 458 MobiDBLite consensus disorder prediction 36 83 - -
Dod05g1778 458 MobiDBLite consensus disorder prediction 405 434 - -
Dod05g1778 458 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 431 - -
Dod05g1778 458 SUPERFAMILY beta-beta-alpha zinc fingers 107 395 IPR036236 -
Dod05g1778 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Dod05g1778 458 SUPERFAMILY beta-beta-alpha zinc fingers 13 38 IPR036236 -
Dod05g1778 458 MobiDBLite consensus disorder prediction 134 170 - -
Dod05g1778 458 MobiDBLite consensus disorder prediction 224 240 - -
Dod05g1778 458 MobiDBLite consensus disorder prediction 301 367 - -
Dod05g1778 458 MobiDBLite consensus disorder prediction 187 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1778 Dod-Chr5 43178913 43180821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1778 13 217 C2H2 Transcription Factor Family AT1G26610 38.426 3.37e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod05g1778 zf-C2H2_6 5e-11 CL0361