Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1750 ATGGTGGGAGCAGGTGTTTATGCTGATGGTGATGGTTGGATGGATGCTCATGCAACCTTCTATGGAGAGGGTGATGCCTCTGGCACAATGGGTGGAGCTTGTGGATATGGAAACCTGTACAGCCAAGGCTATGGGACAGACTCGACTGCTTTAAGCACGGCCTTGTTCAACAATGGTATGAGCTGTGGAGCATGTTTTGAGGTTAAGTGTGTGAATGACCAAAGGCGGTGCCTCCCGGGCTCAGTTGTGGTCACTGCCACCAATTTCTGCCCTCCAAACAATGCCCTCCCAAATGATGCAGGTGGCTGGTGCAACCCTCCCCTTCAACACTTTGATCTTTCTCAGCCTGTCTTCCAACATATAGCTCAATACAGCGCTGGCATAGTACCCGTAGCTTACAGAAGGGTCCCATGTGAAAGGAAAGGGGGCATCAGATTCACCATCAGTGGCCATTCTTACTTCAACCTAGTCCTGATCACCAACGTTGGGGGTGCTGGTGATGTCTGTGCGGTTTCCATCAAAGGCTCAAGAACTGATTGGCAACCAATGTCCAGGAACTGGGGTCAGAACTGGCAAAGCAACGCTTACCTCAATGGACAAAGCCTCTCCTTCAAGGTTACAACCAGTGATGGGCGCACCATGGTCTCTAACGATGTTGTTCCTGCTGACTGGTGCTTTGGTCAGACCTACACGGGCCAACAATTCCCTTAG 711 0.5105 MVGAGVYADGDGWMDAHATFYGEGDASGTMGGACGYGNLYSQGYGTDSTALSTALFNNGMSCGACFEVKCVNDQRRCLPGSVVVTATNFCPPNNALPNDAGGWCNPPLQHFDLSQPVFQHIAQYSAGIVPVAYRRVPCERKGGIRFTISGHSYFNLVLITNVGGAGDVCAVSIKGSRTDWQPMSRNWGQNWQSNAYLNGQSLSFKVTTSDGRTMVSNDVVPADWCFGQTYTGQQFP* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1750 236 SUPERFAMILY PHL pollen allergen 140 232 IPR036749 -
Dod05g1750 236 Gene3D - 142 235 IPR036749 -
Dod05g1750 236 SMART dpbb_1 48 133 IPR007112 -
Dod05g1750 236 PANTHER EXPANSIN 5 235 - -
Dod05g1750 236 Pfam Expansin C-terminal domain 144 221 IPR007117 -
Dod05g1750 236 PRINTS Expansin signature 82 92 IPR002963 GO:0009664
Dod05g1750 236 PRINTS Expansin signature 43 57 IPR002963 GO:0009664
Dod05g1750 236 PRINTS Expansin signature 70 81 IPR002963 GO:0009664
Dod05g1750 236 PRINTS Expansin signature 142 154 IPR002963 GO:0009664
Dod05g1750 236 PRINTS Expansin signature 189 210 IPR002963 GO:0009664
Dod05g1750 236 PRINTS Expansin signature 218 234 IPR002963 GO:0009664
Dod05g1750 236 PRINTS Expansin signature 101 118 IPR002963 GO:0009664
Dod05g1750 236 PRINTS Expansin signature 154 175 IPR002963 GO:0009664
Dod05g1750 236 PRINTS Expansin signature 118 131 IPR002963 GO:0009664
Dod05g1750 236 Gene3D - 5 139 IPR036908 -
Dod05g1750 236 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 31 143 IPR007112 -
Dod05g1750 236 Pfam Lytic transglycolase 49 133 IPR009009 -
Dod05g1750 236 PANTHER EXPANSIN-A15 5 235 IPR002963 GO:0009664
Dod05g1750 236 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 153 232 IPR007117 -
Dod05g1750 236 SUPERFAMILY Barwin-like endoglucanases 12 161 IPR036908 -
Dod05g1750 236 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Dod05g1750 236 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576
Dod05g1750 236 PRINTS Expansin/Lol pI family signature 12 27 IPR007118 GO:0005576
Dod05g1750 236 PRINTS Expansin/Lol pI family signature 30 48 IPR007118 GO:0005576
Dod05g1750 236 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Dod05g1750 236 PRINTS Expansin/Lol pI family signature 180 194 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1750 Dod-Chr5 42910375 42912608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1750 6 235 Expansin Gene Family AT2G03090 78.261 9.14e-139 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1750 - K20628 gmx:100816718 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1750 05 42910375 42912608 Dod02g2469 02 54480547 54482571 ECH
Dod02g1660 02 20651390 20653940 Dod05g1750 05 42910375 42912608 ECH
Dod04g1108 04 31566879 31568659 Dod05g1750 05 42910375 42912608 ECH
Dod05g1750 05 42910375 42912608 Dod05g1750 05 42910375 42912608 ECH