Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1749 ATGGGAAGAGTTAAACTAAAGATAAAGAAATTGGAGAGCACAAGCAACCGACAAGTGACTTATTCGAAGCGGAAAAGTGGAATTCTGAAGAAAGCAAAGGAACTGTCAATACTGTGTGATATAGATATTGTCCTTCTCATGTTTTCTCCAACAGAAAAGCCTACATTGCTACAAGGAGAGCGCAGCAATATTGAGGAAGTCATTGCAAAATTCGCTCAACTTACCCCACAAGAAAGGGCCAAAAGGAAATTGGAAAGTCTTGAAGCACTGAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGCAGTCAAACAGTGGAGGAATTAACTCATCAAGTGAGGGTTCTACAAACTCAGCTTACAGAAATGCATCAGAGACTGAGCTATTGGAGTAATGTTGACAAGATCAATCACTTAGAACACCTTAGGCAAATGGAGGACTCACTGAGGGAATCAATCAATCGAGTGTGTCTACAGAAGGAAAATTTAGGAAAGCACCAACTAATGTCACTTGAATGCACTGCTAACCAGTTACAGGAAGGGGTGAATTTACCCTTGATGATGGCTGGTCTGCAAGAAAACCAACCGCTCTCTTGGCTTTTGAATAATGATAACCAACAATTGATGTTACCAAGTGAACCAAAATTTCTGCCCTTTAGTGATAATACCAATAGAGATGGTGAGTGTTCCACCGACGTTTCACTCCCAGGATATTCTGGTTATATTGGCAATAGCAAACTTGATGGCTCTCCCCAAGTCACTAATATGGGTCAGGGAGGTGGTGCCTTGAACGAGTTGAATGGAACTGCTTGCTTAAATGTCCAACGTTGTGAGCAATTTGCATACCCTCCTCCCCCACCAGATAATGAGGAAGTGAAACATCACCCAACAATGAACAGTAAACTAAGTACGGCGGACTACCAAGTTCACAACAGCTTTGATTTGCCAAGATCGATGTTTGAAAATGGACATCAGTTCTGGAATCCTGCTTCTGGTCCCTGTGGGGTTGCCATGTATAATGAGAATGGCTACCATAGGGTAAGCAGTCCTTTTCTGTTTGATTAG 1089 0.416 MGRVKLKIKKLESTSNRQVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTEKPTLLQGERSNIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSSQTVEELTHQVRVLQTQLTEMHQRLSYWSNVDKINHLEHLRQMEDSLRESINRVCLQKENLGKHQLMSLECTANQLQEGVNLPLMMAGLQENQPLSWLLNNDNQQLMLPSEPKFLPFSDNTNRDGECSTDVSLPGYSGYIGNSKLDGSPQVTNMGQGGGALNELNGTACLNVQRCEQFAYPPPPPDNEEVKHHPTMNSKLSTADYQVHNSFDLPRSMFENGHQFWNPASGPCGVAMYNENGYHRVSSPFLFD* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1749 362 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dod05g1749 362 Coils Coil 77 97 - -
Dod05g1749 362 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 355 - -
Dod05g1749 362 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Dod05g1749 362 Coils Coil 114 134 - -
Dod05g1749 362 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Dod05g1749 362 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Dod05g1749 362 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Dod05g1749 362 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 355 - -
Dod05g1749 362 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod05g1749 362 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod05g1749 362 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod05g1749 362 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1749 Dod-Chr5 42903633 42909462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1749 1 275 Type I MADS-box Gene Family AT2G03060 51.943 4.69e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod05g1749 SRF-TF 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1749 - - adu:107468091 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1749 05 42903633 42909462 Dod05g1749 05 42903633 42909462 ECH