Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1737 ATGAAAAAGAAGCAAGTGGTGGTGAGAAGAGAGGTTATTAGCAACACTTCAGCTTCAGAGGTGAGAAACAATGTTCGATATGTGGAGTGCCTGAAGAATCATGCTGCTAATAGCGGAGGGTACGCTGTGGATGGGTGCAGGGAGTTCATGGCTAGCTCGGGGGAGGGAACAAGTGGGGCGCTCACATGTGCGGCTTGTGGCTGCCACAGAAACTTCCACAGAAGGCAAGCAAAAGAACATCTCTCTAATGAGTGA 255 0.498 MKKKQVVVRREVISNTSASEVRNNVRYVECLKNHAANSGGYAVDGCREFMASSGEGTSGALTCAACGCHRNFHRRQAKEHLSNE* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1737 84 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 78 - -
Dod05g1737 84 Pfam ZF-HD protein dimerisation region 24 77 IPR006456 -
Dod05g1737 84 PANTHER MINI ZINC FINGER PROTEIN 3 1 78 - -
Dod05g1737 84 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 26 76 IPR006456 -
Dod05g1737 84 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 27 76 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1737 Dod-Chr5 42823393 42825524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1737 1 76 Zinc finger-homeobox gene family AT1G18835 67.105 3.93e-29 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dod05g1737 ZF-HD_dimer 2.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1737 - - csin:114306891 122.094