Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1736 ATGGGGAGGCCACCTTGCTGTGAGAAAATTGGGATTAAGAAAGGACCGTGGACTCCTGAAGAGGACATCATCTTGGTCTCTTACATTCAAGAACACGGACCTGGGAATTGGAGATCAGTTCCCACCAATACAGGTTTGATGAGATGCAGCAAAAGCTGCAGACTTAGATGGACTAACTATCTTCGACCAGGTATCAAACGAGGAAACTTCACCGATCATGAGGAGAAGATGATAATCCACCTCCAAGCCCTTTTGGGCAATAGATGGGCTGCTATAGCTTCCTACCTTCCACAGAGGACAGACAATGACATAAAGAACTATTGGAACACCCATTTGAAGAAGAAGGTCAACAAGAACAACCAAACTGATGAGGATGGTAATGACCAAGAAGGACGTTCCTCTTCTTCACAACAGCCAAAGGGTCAGTGGGAGAGAAGGCTCCAAACAGATATCCAAAGGGCCAAACAAGCCTTATCTGAGGCTTTGTCCCTTGACAAGCCAACCCACAATATTTTGCCCGAGGCAAAGCCCGCTAATAACAACAGCTCATATCACACTTCTTCTGCGTACCCCACTAGACCAAACCATGCATCTTCATATGCATCAAGCTATGAAAACATTGCGCGGTTGCTTGAGAACTGGATGAAATCCCCAAACTCAGGTGAATCCACCTATTCTGGAAACATGGTCACCACCACAGGGTCCAGTCCTAATAGTGAAGGAGCACAAAGCACAACCCCAGATCATGCTTTTGATTCCCTTTTGAGCTTCAAATCCGATGGTGGCTCTCGATCTGTTGTTTCGGTTGAAGAGAACAGCAGCAGCGGCTTCACAACGAATAAGGGTGAGGTACAAGTCCCTTTTACCTTGCTTGAGAAGTGGCTCTTTGATGATGGGGGTGCTCAATGCCATGAAGATCTCATGAACATGTCACTGGAGGAAAGTACCGCAGATTTGTTCTAG 963 0.4642 MGRPPCCEKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVNKNNQTDEDGNDQEGRSSSSQQPKGQWERRLQTDIQRAKQALSEALSLDKPTHNILPEAKPANNNSSYHTSSAYPTRPNHASSYASSYENIARLLENWMKSPNSGESTYSGNMVTTTGSSPNSEGAQSTTPDHAFDSLLSFKSDGGSRSVVSVEENSSSGFTTNKGEVQVPFTLLEKWLFDDGGAQCHEDLMNMSLEESTADLF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1736 320 CDD SANT 69 112 IPR001005 -
Dod05g1736 320 CDD SANT 16 61 IPR001005 -
Dod05g1736 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod05g1736 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 305 - -
Dod05g1736 320 Gene3D - 13 66 - -
Dod05g1736 320 MobiDBLite consensus disorder prediction 161 198 - -
Dod05g1736 320 MobiDBLite consensus disorder prediction 219 255 - -
Dod05g1736 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Dod05g1736 320 MobiDBLite consensus disorder prediction 131 145 - -
Dod05g1736 320 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dod05g1736 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod05g1736 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod05g1736 320 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 305 - -
Dod05g1736 320 Gene3D - 68 145 - -
Dod05g1736 320 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod05g1736 320 MobiDBLite consensus disorder prediction 174 198 - -
Dod05g1736 320 MobiDBLite consensus disorder prediction 115 130 - -
Dod05g1736 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Dod05g1736 320 MobiDBLite consensus disorder prediction 115 147 - -
Dod05g1736 320 SMART sant 13 63 IPR001005 -
Dod05g1736 320 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1736 Dod-Chr5 42756019 42757863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1736 1 312 MYB Transcription Factor Family AT5G62470 52.125 1.13e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod05g1736 Myb_DNA-binding 9.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1736 K09422 - gmx:100794319 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1736 05 42756019 42757863 Dod05g1736 05 42756019 42757863 ECH