Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1730 ATGGAGGGAGGTGATGATCTCCACCACCATCACCACCGCCAAAACTTCCCATTCCAACTCTTGGAGAAGAAGGAAGATCAAGAAGCATCATGCTCCACCTCCTCCCCTTATCCTTCCTTAGCAATCTCATCAGCCGAACCAAGCACCTCCAATTCAACAAGATCCAACACCAACAACAACAACAATAGCATCCAAATCTTACAGCAACAACCACCTTCCTCCTCCTGCGAACCCTCTAGCAAGAAACCTCCACCTAAGCGGACCTCCACGAAGGACCGCCACACAAAGGTGGACGGCCGTGGCCGCCGCATCCGAATGCCGGCCTTGTGCGCCGCCCGGGTATTCCAGCTGACCCGGGAGCTCGGCCACAAGTCCGACGGCGAGACCATCGAGTGGCTCCTTCAGCAGGCGGAGCCAGCAGTGATCGCCGCCACGGGCACAGGCACCATCCCCGCTAACTTCACCTCCCTCAACATCTCCCTCCGAAGCTCCGGCTCCTCCATGTCCGTCCCTTCCCAGCTCCGATCCTCCTACTTCAACCCTAACTTCTCCCTCCAACAACGTAGGGCCTTGTTCCCCGGAATAACCCTATCCTCCGATACCACAAACAACACCGCAACGCTTCTCAACTTCCAACAACAACAGCAGCAGCAGCAGCAACAACAACAACCCAATACCCTAACCACAACCATGTTCAAGCACGAGCTCCGAGAAAGCGGGAACGCTCCTTCTTCTTCCACGTTGGATTTGTCTGAGACGAGTACGGAAGAAGGGTCGTTAGGGAGAAAGAGAAGACCCTCCTCGGAGCACGACTTGTCTTCTGCGCAGCACCAAATGGGGAGTTATCTGCTGCAGTCAAGCGCAGGGGCAATTCCGGCGAGCCACGCTCAGATTCCGGCGAACATATGGATGTTGGCAAATTCCAACAACCAGGTCATGAGCGGTGACCCTATTTGGACCTTCCCGCAGGTTAGCAACAGCGGGTTGTACCGTGGCACCGTGTCGAGTGGTTTGCATTTCATGAACTTCCCTACCCCTATGGCCTTGTTGCCGAGTCAGCAATTGGGTTCTTCTGGGGTTGGTGGTGGCGTTGGAGGTAGCGGCAGCGGCGGCGGCGGTAACGTGAATGAAGGACATTTGAGCATGATCACGGGGCTTAGCCCTTACCGGCCGGTGATTGGAGTCTCCGAGTCTCAGGCGAGTGGATCGCAGTCTCATCATCATCATCATCAGCATCGAGATGGCAGCGATGATCGACATGATAGTACCAGCCACCACTCGTGA 1284 0.5576 MEGGDDLHHHHHRQNFPFQLLEKKEDQEASCSTSSPYPSLAISSAEPSTSNSTRSNTNNNNNSIQILQQQPPSSSCEPSSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRALFPGITLSSDTTNNTATLLNFQQQQQQQQQQQQPNTLTTTMFKHELRESGNAPSSSTLDLSETSTEEGSLGRKRRPSSEHDLSSAQHQMGSYLLQSSAGAIPASHAQIPANIWMLANSNNQVMSGDPIWTFPQVSNSGLYRGTVSSGLHFMNFPTPMALLPSQQLGSSGVGGGVGGSGSGGGGNVNEGHLSMITGLSPYRPVIGVSESQASGSQSHHHHHQHRDGSDDRHDSTSHHS* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1730 427 Pfam TCP family transcription factor 88 238 IPR017887 -
Dod05g1730 427 MobiDBLite consensus disorder prediction 397 427 - -
Dod05g1730 427 MobiDBLite consensus disorder prediction 237 255 - -
Dod05g1730 427 MobiDBLite consensus disorder prediction 256 271 - -
Dod05g1730 427 MobiDBLite consensus disorder prediction 84 103 - -
Dod05g1730 427 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 426 IPR005333 GO:0003700
Dod05g1730 427 MobiDBLite consensus disorder prediction 30 83 - -
Dod05g1730 427 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 9 426 - -
Dod05g1730 427 MobiDBLite consensus disorder prediction 410 427 - -
Dod05g1730 427 MobiDBLite consensus disorder prediction 359 379 - -
Dod05g1730 427 ProSiteProfiles TCP domain profile. 90 144 IPR017887 -
Dod05g1730 427 MobiDBLite consensus disorder prediction 237 276 - -
Dod05g1730 427 MobiDBLite consensus disorder prediction 1 103 - -
Dod05g1730 427 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1730 Dod-Chr5 42693260 42696701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1730 65 354 TCP Transcription Factor Family AT3G47620 46.089 1.24e-63 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Dod05g1730 TCP 1.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1730 - - pvu:PHAVU_003G190900g 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1730 05 42693260 42696701 Dod05g1730 05 42693260 42696701 ECH
Dod02g1615 02 20129013 20131867 Dod05g1730 05 42693260 42696701 PCT