Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1728 ATGGAGGTTTTTACGGTGCTCACGAACAGGCACGACAGTGGGGAGAAAGAAGGGGATTTGAAGGCAGAGGGGGAAGGGGAGTGGTGCTGCGATGCTGGCGGCATGGTGGTGGACTGGTTACTAGGGTGGGTGGGTGTATCGCTGGCTCCATTCCCATATTCTCCTTGTTGTGCGTGGAATGAGTTGTGTGGTAGACTCCTCGACAATCGTCACCATGAGGCAGGATCCTATAGGGTTGGGTTGGGATCAAGACCCAAACGCCATGACCGAAAGGTAGAAACCCAATCGAGAACCCGTCTTCTACGAGTTCACAAGGTAGGAAATTTTGTTGTTGGAAGGAGTCATTCTGTTATGTGTAAAATGGGATCTGAGAACCAGGCTCCGATGGCTGAGACTTCAAAAAACAGGTCTTCTCCTAGTAAAATGACCCAAGGGAAGGTCCCTAAAAGAATTAACAAGGCTGAAAGAGAGAAAATGAAGCGTGAACATTTGAATGAACTCTTTCTTGATCTTGCCAATGCACTTGATGTAAATGAGCAGAACAACGGAAAGGCTTGTATATTGTCTGAAGCTGCTAGGCTGCTGAAGGACTTAAATGGCCAGATTGAGTCTCTCAAGAAGGAGAACATGTCTCTGTTGTCCGAATCTCATTATGTGACCATGGAGAAAAATGAGCTAGAGGAGGAGACTTCAAATCTCGAAACTCAAATTGAGAAACTTCAAGTTGAGATACAAGCAAGAGTGGCCCAGTCTAAACCTGACCTGAACGTACCTCCTCATTCAGAACTTGAGCCGGCAGAGCAGCCGGATTTTCTTTCTACCATTGAACCCAACTTGCCACAAGGTCCTGCGGTTTTGGTTGTCCCCTATCGCCCGGATCTCCAAGCTGTTTTTCCGGCTCCTAGTGTTGCTGAGGTCACGCCAATACCTGCATCAATCATCAGTAAACCGCATCCGAGGTATCCCACCCCAGCAGATTCATGGCCTTCATTGCTGCTTGGACGGCAACCAACATCAAGTTAA 1023 0.479 MEVFTVLTNRHDSGEKEGDLKAEGEGEWCCDAGGMVVDWLLGWVGVSLAPFPYSPCCAWNELCGRLLDNRHHEAGSYRVGLGSRPKRHDRKVETQSRTRLLRVHKVGNFVVGRSHSVMCKMGSENQAPMAETSKNRSSPSKMTQGKVPKRINKAEREKMKREHLNELFLDLANALDVNEQNNGKACILSEAARLLKDLNGQIESLKKENMSLLSESHYVTMEKNELEEETSNLETQIEKLQVEIQARVAQSKPDLNVPPHSELEPAEQPDFLSTIEPNLPQGPAVLVVPYRPDLQAVFPAPSVAEVTPIPASIISKPHPRYPTPADSWPSLLLGRQPTSS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1728 340 MobiDBLite consensus disorder prediction 313 340 - -
Dod05g1728 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 214 IPR036638 GO:0046983
Dod05g1728 340 CDD bHLH_AtILR3_like 153 226 - -
Dod05g1728 340 Gene3D - 145 224 IPR036638 GO:0046983
Dod05g1728 340 PANTHER TRANSCRIPTION FACTOR BHLH47 123 338 - -
Dod05g1728 340 Coils Coil 188 215 - -
Dod05g1728 340 MobiDBLite consensus disorder prediction 126 145 - -
Dod05g1728 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 198 IPR011598 GO:0046983
Dod05g1728 340 Coils Coil 223 243 - -
Dod05g1728 340 MobiDBLite consensus disorder prediction 124 149 - -
Dod05g1728 340 PANTHER TRANSCRIPTION FACTOR BHLH47 123 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1728 Dod-Chr5 42652205 42655667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1728 135 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 52.000 4.32e-60 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1728 - - mtr:MTR_4g108360 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1728 05 42652205 42655667 Dod05g1728 05 42652205 42655667 ECH