Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1722 ATGCCTCGAGCCTGTCGTAGACCACTGCCGCTGCGTCGTGAAGCCATTGCATACGGAAGGTCAAGGTCAAGGTCAAGGCAATCAAGTGGTTCAAACAATATCACCGACGATCAGATCGACGACCTTGTCTGCAAGTTACATGAGCTTCTTCCTCAGATTCGCCATAGGCGCTCTGATAAGGTGTCATCTGCGAAGGTGTTGCAAGAGACATGCAACTATATCAGAAGCTTACACAGGGAGGTGGGCGATCTAAGCGAGCGCCTGTCTGAGCTGTTAGCAACAACTGACACGGCCCAAGCAGCAGTGATTAGAACTTTGCTTCATCAGTAG 330 0.5061 MPRACRRPLPLRREAIAYGRSRSRSRQSSGSNNITDDQIDDLVCKLHELLPQIRHRRSDKVSSAKVLQETCNYIRSLHREVGDLSERLSELLATTDTAQAAVIRTLLHQ* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1722 109 PANTHER TRANSCRIPTION FACTOR PRE3 21 107 - -
Dod05g1722 109 CDD bHLH_AtPRE_like 34 94 - -
Dod05g1722 109 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 37 95 IPR036638 GO:0046983
Dod05g1722 109 Pfam Helix-loop-helix DNA-binding domain 37 78 IPR011598 GO:0046983
Dod05g1722 109 Gene3D - 36 105 IPR036638 GO:0046983
Dod05g1722 109 Coils Coil 74 94 - -
Dod05g1722 109 MobiDBLite consensus disorder prediction 21 36 - -
Dod05g1722 109 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 23 77 IPR011598 GO:0046983
Dod05g1722 109 PANTHER TRANSCRIPTION FACTOR PRE 21 107 IPR044293 GO:0006355|GO:0040008|GO:0046983
Dod05g1722 109 MobiDBLite consensus disorder prediction 16 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1722 Dod-Chr5 42582134 42584894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1722 34 109 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 72.727 1.96e-34 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod05g1722 HLH 3.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1722 - - gmx:100787967 138.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1608 02 19917262 19918611 Dod05g1722 05 42582134 42584894 ECH
Dod04g1068 04 30764691 30765840 Dod05g1722 05 42582134 42584894 ECH
Dod05g1722 05 42582134 42584894 Dod05g1722 05 42582134 42584894 ECH