Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1716 ATGGAGTTTCCTGGATCTGGTGATGATGATGGACTCAAGGAAGACAAGAGAAGTGACTATAGTGTTGGTGATGATGATGATGGTCATCAGAAACAAGATACTATTGTTAAGGAATCACGCATGAATAATATCAATAATGGTGAAAAACAGCCAATACCAGAGGCTGGACCAAGCACATCTTCAGCCAAAAAGGAAGAGGTAGATGAACAGCTTGAAACTACTAAAGCGGAAATGGGTGAAGTAAGAGAAGAAAATCAAAGGCTAAAGATGTGTCTGAACAAAATAATGAACGAATACCGGACACTACAAATGAAATTTCCCCATATAGTTAAGCAAGAAACAAGAAAGCCTGAAGACAAAGGAAATGATGACGATATTCATCAAGAAATAATGGAGGAGCCGGAGCTAGTTTCCCTCAGCCTTGGAAGAGTTCCGAGTAATATTCCAAGAAATGAAGAGAAAGTAGTCAAAGTCTCTAGAGCATTATTGATGAAGGAACACGGAGAATTTAACGAAAACTTGACTCTTGGGTTGGACTGCAAATTCGAGACATCAAAGTCAGGAAGCACAACTGAAGCATTGCCAAATAATAATCCAAGCCCAGCCAACAGTTCTGAAGTGCCGAAGGAAGAAGCTGGGGAGACTTGGCCACCAAGTAAGGCACTCAAGACAGTGAGAGATGCTGAAGATGAAGTGTCTCAACAAAACCCTGCGAAGAAAGCTAGAGTTTGCGTGAGAGCAAGATGTGACACCCCAACGATGAATGATGGCTGTCAGTGGAGGAAATATGGACAAAAGATTGCAAAGGGAAATCCTTGTCCTCGAGCTTATTATCGTTGCACTATTGCACAATCATGCCCAGTAAGAAAACAGGTGCAAAGATGTGCTGAGGACATGTCAATCTTACTCACCACCTACGAAGGGAACCACAACCACCCTCTCCCTCTTTCAGCTACTGCCATGGCTTCTACAACTTCTGCAGCTGCTTCCATGCTCTTGTCTGGTTCCACAACCTCCCACACCAGCTCAATGCCTTCAACAAACACTGCCACCACCGCTTCCAATCTCCATGGCCTGAACCTCTATCTTCCAGATGCTTCCAAATCAAAGCAACTATACCTGTCCAACCCTGCCCTATCATCTTCACTACCTTCACACCCAACAATCACCCTTGACCTCACTTCAAACCCAGCAGCCACTTCCTCATCTCCCTTTGTTAGATTCTGTTCAAACTACAACCAACCAATCAAGTACCCTTCTTCCACAAGCCTGAGCTTCAGTTCTTCCTTAGAATCCAATAATGCAATGCCTTGGATCAACAGTATTGGGTTGCTCAACTATGGTACTCATCAACCATATAATAATAACAACAACAGGAACAACAATATCCTTGGCAATGTGAACTTTGGGAGACAAGTACAAGTCCAACAACCAGTGGAAAATTTCTACCAATCAATCATGCAAAAGAACAACAACTCCTCAGTATTCCCTCCTTCTCAACATGCACTGCCAGATACTATAGCTGCCGCAACAAAGGCTATTACAGCAGACCCTACTTTTCAATCAGCTTTGGCAGCAGCACTTTCTTCATACATTGGTGGAGGGAGTAGTAGTGGAATTGGAAGCACTACTACTCAAGGGAATCAATTAGGTGATGGAGACAATTTGGGTCCGAAGATGAAATGGGCAGAGCTGTTTCCAGCTGCTGCGGCTTCTTCTTCTGCTGCCTTGTCTTCAACTACTTCAATAGTCAACAATGCTTGTTCATCAAGCTTCTTGAACAAAACGCTGGGGAAAGCAGTACAGAACGGTAGCTTGATGTTTCTACCGCCTTCTTTGCCGTTTTCTTCCCCAAAAAGTGCGTCTGCATCTCCTGGTGGTGATAATAGAGACAACAACAATTAA 1905 0.4352 MEFPGSGDDDGLKEDKRSDYSVGDDDDGHQKQDTIVKESRMNNINNGEKQPIPEAGPSTSSAKKEEVDEQLETTKAEMGEVREENQRLKMCLNKIMNEYRTLQMKFPHIVKQETRKPEDKGNDDDIHQEIMEEPELVSLSLGRVPSNIPRNEEKVVKVSRALLMKEHGEFNENLTLGLDCKFETSKSGSTTEALPNNNPSPANSSEVPKEEAGETWPPSKALKTVRDAEDEVSQQNPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAQSCPVRKQVQRCAEDMSILLTTYEGNHNHPLPLSATAMASTTSAAASMLLSGSTTSHTSSMPSTNTATTASNLHGLNLYLPDASKSKQLYLSNPALSSSLPSHPTITLDLTSNPAATSSSPFVRFCSNYNQPIKYPSSTSLSFSSSLESNNAMPWINSIGLLNYGTHQPYNNNNNRNNNILGNVNFGRQVQVQQPVENFYQSIMQKNNNSSVFPPSQHALPDTIAAATKAITADPTFQSALAAALSSYIGGGSSSGIGSTTTQGNQLGDGDNLGPKMKWAELFPAAAASSSAALSSTTSIVNNACSSSFLNKTLGKAVQNGSLMFLPPSLPFSSPKSASASPGGDNRDNNN* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1716 634 SUPERFAMILY WRKY DNA-binding domain 247 315 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dod05g1716 634 Coils Coil 64 84 - -
Dod05g1716 634 Pfam WRKY DNA -binding domain 255 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dod05g1716 634 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 41 629 IPR044810 GO:0003700
Dod05g1716 634 SMART WRKY_cls 254 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dod05g1716 634 MobiDBLite consensus disorder prediction 185 205 - -
Dod05g1716 634 MobiDBLite consensus disorder prediction 185 237 - -
Dod05g1716 634 MobiDBLite consensus disorder prediction 1 36 - -
Dod05g1716 634 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 41 629 - -
Dod05g1716 634 MobiDBLite consensus disorder prediction 37 57 - -
Dod05g1716 634 ProSiteProfiles WRKY domain profile. 249 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dod05g1716 634 MobiDBLite consensus disorder prediction 1 71 - -
Dod05g1716 634 Gene3D WRKY domain 238 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dod05g1716 634 MobiDBLite consensus disorder prediction 615 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1716 Dod-Chr5 42525695 42531177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1716 5 534 WRKY Transcription Factor Family AT1G18860 38.313 2.27e-80 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dod05g1716 WRKY 7.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1716 - - pvu:PHAVU_003G192000g 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1054 04 30452752 30454966 Dod05g1716 05 42525695 42531177 ECH
Dod05g1716 05 42525695 42531177 Dod05g1716 05 42525695 42531177 ECH
Dod02g1594 02 19598398 19604380 Dod05g1716 05 42525695 42531177 PCT