Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1712 ATGGAAGCTAACAAGCTTGGATTACTATTCTTTTGTGTGTTTTATCTTGCTGTGTTCCCTACCCTTAAGGCTAATATAGCTGAATTCGACCCAGTCTGGCAGAAGCGGGCTCTGGAAGCCAACAAAGCAGCTCACCAGGCTTTCAATCCAAACCCTGAGGAAGTAACTGCTGATTTCAATGAGCATGTCAACAGAGCTCTTAAAGGTTCCAATAGCACGAGGAGGGGTTTATCCAAATACGGTGGCCCATGCATGGCAACAAATCCCATTGACAGTTGCTGGAGATGTGACCCCAATTGGGAGAAAAACCGCCAGAGGCTAGCAGACTGTGTCATTGGTTTTGGCCAGGGCACAACAGGAGGCAAAAATGGCAAAATCTATGTGGTCACTGACCCATCTGACAATGACCTTGTCAACCCAAAACCAGGGACTTTGAGGTATGCTGTCATTCAACCGGAGCCACTATGGATCATTTTTGCACATGACATGACCATCAAGCTAACTGAGGAGCTTATGGTAACTGATCACAAGACCATAGATGGACGTGGTGCCCATGTTCAAGTATGCAATGGTGCCCAAATCACGTTGCAATATGTGAAGAACATAATCATTCACGGGATACACGTCCATGATATCAAAAAAGGTCGTGGTGGACTCATCAGGGACTCAATTGACCACTATGGAATCCGCACACAAAGTGATGGTGATGGGATTTCATTGTTTGGAGCCAGCAATATTTGGATAGACCATGTTTCTTTGTCCAATTGTGATGATGGCCTAATTGATGTCATTATGGGATCAACGGCCATTACCATCTCAAACTGCCACATGACCCACCATAATGAAGTTATGTTATTTGGTGCAAGTGATGCCTACTCAGGAGATCAAATCATGCAAATAACACTGGCTTTCAACCATTTTGGGCAAGATTTGGTGCAGAGGATGCCAAGGTGCAGATGGGGATTCGTCCATGTTGTCAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCCAGCATCCCACCATCGTTAGCCAGGGCAACCGATTCATTGCTCCTCCAAACCCAGATGCAAAGGAGGTGACCAAGAGGGATTATGCTCCTCAAAGTGTGTGGAAAAATTGGGATTGGAGATCAGAGCAAGACTTAATGTTGAATGGAGCCTTCTTCACTGAGTCTGGGCAACAGGTTACGAATTTTCCCAAGACAGGAGGAGACATCACTGCAAAGCCGGGGACATTTACAGCAAGTCTCACTCGCTTTGCAGGTCCTCTTAAATGTGCAAAAGACAAGCCATGCTAA 1311 0.4569 MEANKLGLLFFCVFYLAVFPTLKANIAEFDPVWQKRALEANKAAHQAFNPNPEEVTADFNEHVNRALKGSNSTRRGLSKYGGPCMATNPIDSCWRCDPNWEKNRQRLADCVIGFGQGTTGGKNGKIYVVTDPSDNDLVNPKPGTLRYAVIQPEPLWIIFAHDMTIKLTEELMVTDHKTIDGRGAHVQVCNGAQITLQYVKNIIIHGIHVHDIKKGRGGLIRDSIDHYGIRTQSDGDGISLFGASNIWIDHVSLSNCDDGLIDVIMGSTAITISNCHMTHHNEVMLFGASDAYSGDQIMQITLAFNHFGQDLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPDAKEVTKRDYAPQSVWKNWDWRSEQDLMLNGAFFTESGQQVTNFPKTGGDITAKPGTFTASLTRFAGPLKCAKDKPC* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1712 436 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Dod05g1712 436 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Dod05g1712 436 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Dod05g1712 436 PRINTS Pollen allergen Amb family signature 407 430 IPR018082 -
Dod05g1712 436 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Dod05g1712 436 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Dod05g1712 436 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Dod05g1712 436 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Dod05g1712 436 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Dod05g1712 436 PANTHER PECTATE LYASE 18-RELATED 8 436 IPR045032 GO:0030570
Dod05g1712 436 SUPERFAMILY Pectin lyase-like 88 426 IPR011050 -
Dod05g1712 436 Gene3D - 87 429 IPR012334 -
Dod05g1712 436 SMART amb_all 162 359 IPR002022 -
Dod05g1712 436 PANTHER PECTATE LYASE 8 436 - -
Dod05g1712 436 Pfam Pectate lyase 170 353 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1712 Dod-Chr5 42476247 42478521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1712 8 436 Polysaccharide Lyase AT1G14420 57.942 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1712 K01728 - gmx:100801864 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1712 05 42476247 42478521 Dod02g2510 02 55419777 55422121 ECH
Dod05g1712 05 42476247 42478521 Dod05g1712 05 42476247 42478521 ECH