Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1704 ATGGCGGGTGGGAGGGTCTTCAGCGCAGGCGTAGTTCCCAACATGAATAACAACAATATTTTGCTTCAGAGTCAAACTGCTTGTGCCACTTCCGAGCCTCTTTTCTTTTCTGCACCTGCTCCTTCTTTCCTCGGTTCAAGATCTATGGTGAGCTTCGAAGATGTTCGAGGAGGGAAGGGGTGTAACGGGTCCTTCTTCCGCGATTACGACCCCGACGAGAACTGCGATGACGGCATGGACGACTACTTCCACCAGCCGGAGAAGAAGCGGCGCCTCTCCGCGGACCAAGTCCAGTTTCTGGAGAAGAGCTTCGAGGAAGAGAACAAGCTTGAACCGGAGAGGAAGACCAAGCTCGCCAAGGACCTCGGCTTGCAGCCACGCCAAGTCGCCATATGGTTCCAGAACCGCCGTGCACGGTGGAAGACCAAGCAGCTGGAGAAGGATTACGAGTCCCTCCAGGCTAGCTTTGACGGCCTCAAGGCCAACTACGACAACCTCCTCAAGGAGAAAGATAGATTGAAAGCTGAGGTGGCGAACCTCACGGAGAAGGTGGTTATGAGAGAGAAACAAGGGGGGAATGACCACTTGAAGTTACAGGCTGGGAGTACTGAAACAAACGGATTGCAGGAACCATCATCATCATCAGAACCGCAGAAGCCTCCTCTTGCTGTTGATTCAGTTTCTTCGGATGGTGAAGGGTCCAAGGTCTCTGTTGTTGGGGCAGCTTGCAATAAGCATGAGGAAATCAGTTCGGTGAAGAGTGACATTTTGGACTCTCAGAGCCCGCATTACACGGACGGTGTTCATTCCTCATCGGCGCTGCAGCAGCTGGAAGCAGGTGATTCCTCCTACGTGTTCGAAACTGACCAATCAGATCTGTCGCAGGACGAGGAAGACAACCTCATCAGCAAGAGCCTCTTGCATCCCTACATCTTCCCCAAGCTTGAAGACGTCGATTACTCCGACCCCCCCGAAACTTCGTGTAATTTTGGATTCCCGGAGGAAGATCATCATGCTGCCTTTTGGCCCTGGTCTTACTGA 1041 0.5274 MAGGRVFSAGVVPNMNNNNILLQSQTACATSEPLFFSAPAPSFLGSRSMVSFEDVRGGKGCNGSFFRDYDPDENCDDGMDDYFHQPEKKRRLSADQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYESLQASFDGLKANYDNLLKEKDRLKAEVANLTEKVVMREKQGGNDHLKLQAGSTETNGLQEPSSSSEPQKPPLAVDSVSSDGEGSKVSVVGAACNKHEEISSVKSDILDSQSPHYTDGVHSSSALQQLEAGDSSYVFETDQSDLSQDEEDNLISKSLLHPYIFPKLEDVDYSDPPETSCNFGFPEEDHHAAFWPWSY* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1704 346 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 344 - -
Dod05g1704 346 SMART HOX_1 86 147 IPR001356 GO:0003677
Dod05g1704 346 MobiDBLite consensus disorder prediction 254 283 - -
Dod05g1704 346 CDD homeodomain 88 144 IPR001356 GO:0003677
Dod05g1704 346 Gene3D - 138 189 - -
Dod05g1704 346 Coils Coil 135 190 - -
Dod05g1704 346 PRINTS Lambda-repressor HTH signature 123 139 IPR000047 GO:0003677
Dod05g1704 346 PRINTS Lambda-repressor HTH signature 114 123 IPR000047 GO:0003677
Dod05g1704 346 Pfam Homeobox associated leucine zipper 143 184 IPR003106 GO:0006355|GO:0043565
Dod05g1704 346 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Dod05g1704 346 MobiDBLite consensus disorder prediction 253 283 - -
Dod05g1704 346 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 344 IPR045224 GO:0003700
Dod05g1704 346 Pfam Homeodomain 88 141 IPR001356 GO:0003677
Dod05g1704 346 Gene3D - 91 137 - -
Dod05g1704 346 MobiDBLite consensus disorder prediction 196 222 - -
Dod05g1704 346 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Dod05g1704 346 MobiDBLite consensus disorder prediction 186 235 - -
Dod05g1704 346 SUPERFAMILY Homeodomain-like 73 145 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1704 Dod-Chr5 42416859 42419937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1704 86 184 Homeobox Transcription Factor Family AT3G01470 68.687 2.42e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod05g1704 Homeodomain 4.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1704 - - qsu:112006246 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1704 05 42416859 42419937 Dod05g1704 05 42416859 42419937 ECH