Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1696 ATGGGTAACTGCAACGCTTGCGTGCGAGGAAACGACGTCGCAGCAGGGGACAACAGCCTAGGCGAGCAGTCAAACCGGGCCGGAAAGAAGAACAAGAAAACCCGCCCGAACCCTTACGCGGAGGAAGGCCTGCTGCGAAGCTCCCCAGCCCCGATCCGCGTTCTGAAAGACGTTATCCCTCTGGGCCCGCACCGGGCCCGAATCGGGGACAAGTACGTCTTGGGCCGGGAACTGGGCCGAGGCGAGTTCGGCATCACGTACCTCTGCACGGACCGGGAGACCAAGCAGGAGCTGGCCTGCAAGTCCATCTCGAAGCGGAAGCTCCGAACCGCCGTTGACGTGGAGGACGTGAGGCGCGAGGTTGCCATCATGAACGCGCTACCTGACCACCCGAACCTTGTGAAGCTGAGGGCCACGTATGAGGATGATGAGAACGTCCATCTCGTGATGGAGCTTTGTGAGGGTGGGGAATTGTTCGACAGGATCGTGGCCAGGGGGCACTACAGTGAGCGTGCTGCCGCGCACGTGGCTAGGACCATTGCTGAGGTTGTTAGGATGTGTCATGCTAATGGTGTCATGCATAGGGACCTCAAGCCTGAGAATTTCTTGTTCGCTAATAAGAAGGAGAATTCGGTTCTTAAGGCCATTGATTTTGGACTCTCCGTGTTCTTTAGACCTGGAGAGAGGTTTTCGGAGATTGTTGGGAGTCCTTACTATATGGCGCCGGAGGTTTTGAAGAGGAATTATGGGCCGGAGGTTGATGTGTGGAGTGCTGGCGTGATCCTCTATATTTTGCTGTGTGGGGTTCCTCCGTTTTGGGCAGAGTCGGAACAAGGGGTTGCGTTGGCGATATTGAGGGGGGTGATTGACTTCAAGAGGGAGCCATGGCCGCAGATATCGGAGAGTGCTAAGAGCCTCGTGCGTCAGATGTTGGAGCCGGATCCTAAGAAGCGTTTGACGGCTGAACAAGTGCTTGAACATTCCTGGCTACAGAATGCAAAGAAAGCTTCGAATGTTCCATTAGGAGATATTGTGAGGACAAGGCTTAAGCAGTTCTCTGTGATGAATAGATTCAAAAAGAGAGCTCTTCGGGTAATTGCAGAACATTTATCTGTCGAAGAGGTAGAAATAATCAAAGATATGTTTACATTGATGGATACTGACCAAGATGGCAGAGTAACATATGAGGAACTTAAGGCTGGGTTGAAGAAGGTTGGTTCACAATTGGCTGAGTCTGAGATAAGGATGCTGATGGAAGTGGCTGATGTTGATGGGAATGGAGTACTCGACTATGGAGAGTTTGTGGCTGTGACAATTCACTTGCAAAGAATGGAGAACGACGAGCATATCCGCAAAGCATTCATGTTCTTTGACAAAGATGGGAATGGGTATATTGAGTTAGGTGAGCTAGAGGAAGCCTTAGCAGACGAGTCAGGGGAAACTGATACCGATGTGTTGAATGACATCATGCGTGAGGTTGACACTGACAAGGATGGTCGCATCAGTTATGAGGAGTTTGTGGCCATGATGAAAACTGGAACTGACTGGAGAAAAGCATCTAGGCAGTATTCAAGGGAGAGATTCAAGAGCTTGAGCATAAATTTGATGAAAGATGGTTCACTTCAGCTTCATGATGCGATTAGTGGTCAAGCTGTAGTGGTTTGA 1665 0.5069 MGNCNACVRGNDVAAGDNSLGEQSNRAGKKNKKTRPNPYAEEGLLRSSPAPIRVLKDVIPLGPHRARIGDKYVLGRELGRGEFGITYLCTDRETKQELACKSISKRKLRTAVDVEDVRREVAIMNALPDHPNLVKLRATYEDDENVHLVMELCEGGELFDRIVARGHYSERAAAHVARTIAEVVRMCHANGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFRPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAESEQGVALAILRGVIDFKREPWPQISESAKSLVRQMLEPDPKKRLTAEQVLEHSWLQNAKKASNVPLGDIVRTRLKQFSVMNRFKKRALRVIAEHLSVEEVEIIKDMFTLMDTDQDGRVTYEELKAGLKKVGSQLAESEIRMLMEVADVDGNGVLDYGEFVAVTIHLQRMENDEHIRKAFMFFDKDGNGYIELGELEEALADESGETDTDVLNDIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDAISGQAVVV* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1696 554 SMART serkin_6 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod05g1696 554 ProSiteProfiles EF-hand calcium-binding domain profile. 445 480 IPR002048 GO:0005509
Dod05g1696 554 SUPERFAMILY EF-hand 358 537 IPR011992 -
Dod05g1696 554 ProSitePatterns EF-hand calcium-binding domain. 458 470 IPR018247 -
Dod05g1696 554 PANTHER BNAA09G44420D PROTEIN 23 530 - -
Dod05g1696 554 ProSiteProfiles EF-hand calcium-binding domain profile. 481 516 IPR002048 GO:0005509
Dod05g1696 554 Gene3D Phosphorylase Kinase; domain 1 73 157 - -
Dod05g1696 554 SMART efh_1 485 513 IPR002048 GO:0005509
Dod05g1696 554 SMART efh_1 377 405 IPR002048 GO:0005509
Dod05g1696 554 SMART efh_1 413 441 IPR002048 GO:0005509
Dod05g1696 554 SMART efh_1 449 477 IPR002048 GO:0005509
Dod05g1696 554 CDD EFh 449 511 IPR002048 GO:0005509
Dod05g1696 554 MobiDBLite consensus disorder prediction 15 43 - -
Dod05g1696 554 Pfam EF-hand domain pair 448 511 IPR002048 GO:0005509
Dod05g1696 554 Pfam EF-hand domain pair 378 437 IPR002048 GO:0005509
Dod05g1696 554 ProSitePatterns EF-hand calcium-binding domain. 386 398 IPR018247 -
Dod05g1696 554 CDD STKc_CAMK 71 329 - -
Dod05g1696 554 ProSiteProfiles EF-hand calcium-binding domain profile. 373 408 IPR002048 GO:0005509
Dod05g1696 554 ProSitePatterns EF-hand calcium-binding domain. 494 506 IPR018247 -
Dod05g1696 554 Gene3D - 340 514 - -
Dod05g1696 554 ProSiteProfiles Protein kinase domain profile. 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod05g1696 554 SUPERFAMILY Protein kinase-like (PK-like) 68 338 IPR011009 -
Dod05g1696 554 Pfam Protein kinase domain 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod05g1696 554 Gene3D Transferase(Phosphotransferase) domain 1 158 339 - -
Dod05g1696 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Dod05g1696 554 ProSiteProfiles EF-hand calcium-binding domain profile. 409 444 IPR002048 GO:0005509
Dod05g1696 554 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 530 - -
Dod05g1696 554 ProSitePatterns EF-hand calcium-binding domain. 422 434 IPR018247 -
Dod05g1696 554 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1696 Dod-Chr5 42272996 42277350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1696 1 554 EF-hand Containing Proteins AT1G18890 78.881 0.0 898
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dod05g1696 Pkinase 4.6e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1696 K13412 - gmx:100800559 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1696 05 42272996 42277350 Dod05g1696 05 42272996 42277350 ECH