Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1693 ATGGGGAGGCTCTTGCCGAAGTTGCAGAGGCTGTTGCCCAAGAATGTTGATGATGAGTGGATTGAGATGATTCATAATTGTTCTTGGAAGCCTCTGGATGTCTCAGCTGCGGTTAAGATGCTCGAGAGTAAAGTGAAATTCAGCGGTTCTTCGTTCCCTGAGGATTTGTACTTAGATCATCACACTCAGGAGTACTATGACTGTCTTAAAGACGCAAACAATTCTTACCATGAGAAGGAAGCTTTGGGGTATAGTTTCCATAATTGTCAAACAGATAGCCGTGACTATTGTAGAATTGCAGAAAGTGATATCAGAGGTGGTGTCGAAAACCAAGGGTGTATTTCATATCCTTTGGCTGATAGTTGGCCGGTCTCCGATGACTCTGAGCGTGCAAAACTTCTGGAGAAAATTCATGCAGTATTTGAGTTGCTTATTAGACACAAACATCTTGCTGCTAGTCATCTTAACAAGGTCATACAATTTACTGTGGGTGAGATACAGGGTCTTGCTGCTGGTTCTCAACTCATAAACCATGGTGTGGACCTAACACCAATGTGCATATGCTTTCTAGGAGTGTCACAGCTTAAAAAAATTCTCCAATTTCTTCAGGAACTATCTCATTCTTGTGGATTGGGTAGATATGCTGATAAAAGTAGTGGTCCCGTGAATGATTTGCACAATATCAGTCAAGGTCCCGAGATCAGAGAGAATATTGTTCTCAATGGAGATGCATTGTGCCTCCTTCTGGACGAGTCTTTACTGGTGACACAAGCCACTCCTGGTACAGCTCAGGGGACTGTATTGGATGATGTTACTGCCCCAAGTTCTCATGATGTGATTTCATGCGATAATGATGCGTTTCTACCCTGGATATATTCTGGTTCACCCGTTGGTGATCAACTGACATCATGGATGCGAAACAAAGAAGATAAAAAACATCAAGGAACAGAAATTATCAAGATGCTTGAGAAGGAGTTTTATCAGCTACAGAACCTGTGTGAGAAGAAGTCTGACCGGATAAGTTATGAGGAAGCACTGCAGACAGTAGAGGATCTTTGTCTTGAAGAAGGAAAAAAGAGGGAAAATGTTGGTGACTTTGTCCAGCGAAGTTATGAATCTGTCTTAAGAAAGCGGAGAGAAGAGCTCATTGAGTACGAGCATGATGTAACATATGTTAGCAATAGGTTTGAGTTGGATGCTATATCCAATGTTTTGCAAGAAGCTGAAGCAATGAATGTTAATCAATTTGGCTATGAGGAAACTTATGGTGGTGTGACTGCTCAGTTATGCGATTTGGAATCAGGTGAAGAAGAAGAATTGAGAATGAAGGACTACTTGCATCAAATGGATGGTTGCATAGAAATTGCCATTCAGAAACTGAAAGAGCACTTGTCTATAGAGCTTAGCAAAATTGATGCACGGATCATTCGAGATATTACAGATATGCAGCAAATGGAATTCAAGCTTGGGCCTCTTTCTGCTTATGATTATCGGGCAATATTATTGCCTCTAGTGAAGTCATACCTACGGGCACTCTTGGAAGATTTGGCTGAGAAGGATGCAATTGAGAAGTCTGATGCTGCAAGAGAAGCATTTTTGGCTGAACTAGCTCGTGATTCCAAGAAGGCTAAAGGGGGAAGTGAGAACTTGAGACATGCAGAGAAGACAAAAGAAAAGAAGAAGAACAAAGATCACAGAAAACCTAAAGATATGAAGTCTACAAGTGGTCATGAGCTGCTGTTGCTTCAAGCTACAAGTCCTGATTCCAGTTCAGTTGCACCTAGTAGTTTCTTTCAAGATCCTGAGGTTGGTTCTATGAATGGTGATGACTTGGAACAACAGGATGAGGAATATAGACGGAAAATTGAGCTAGAAGAAGAGGAAAAAAAGCTTGAGGAAACCCTAGAATTTCAGCGAAGGATAGAAAATGAAGCCAAACAGAAACATCTTGCTGAATTACAAAAGAAATCATCTGGGATCTGTTTGGAGGAAGTGGCAGACAAACTTCTGGATGTTCAATTGAAGGCAGTTGCTGAGGGTCCAGATGTGCATGAACATGAGCAGTTAGCAAAGGAGAATGGGTGTCCAAGGAATCTGGATAGTGTGCTTATCACCATTATAAATGGTTCCATGGTGCCAAGTAAATCTTCAGCTGATTCAGCTGCCCAAAAGATTAATTATTTGCATCAGTCAAAAGTTAAACAAGATCTCGCTAACGGAGTTGCTCCAGAGAATGGTCTCCAGTTGTCTGATCGCCGTGCTGGAAAAAAGCATAAACGGCATAAGAATACTTCCAGAGTGGTTGATGGAAAGTTAGAATCTGTCCCATTGGAAAAAAATATTGAGGATGCACATACTGACAGTAACTTAAGAGAGCCGGTTAAATTCCATAGCAATCAAGATGGTAACAATGTGTGGGAAAACAATGGATCAACGGCGATGAAAGATTTGCATATGGAAGATGAGGAGGAGGAAAGATTCCAAGCTGATCTTAAAAAAGCTGTACGACAAAGCTTGGACACATACCAAGCATGTGGAAAATTGCCTATGAATTCTAGTTTAAGAATGCCGCAGAGAGCTTCTTCACAAGTAGGTTCTTTAGGTTTTCCACCAGAGGAAGACGCAACTGAGGACATGAATGGAGCTATTTTGCTTGGTACTGGGCTTAAAAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCGTTATGGCATTTAAGACGCTTTCGGGAGGAATTCCTTGGCAGATCAAGATCAGAACATGATCATGTGGGTATTCCGTGTGTTGTCTGTGCATTGTCTGAAATCTTTACTGCTTTGGACCTTGCATCAAAGGATTCAAGGAGAGAAGCAGTCGCACCCACTTCCCTGCGGATAGCACTGAGCAACCTATATCCTGATAGTAACTTCTTCCAGGAGGGTCAGATGAACGATGCTTCCGAGGTGCTGGCAGTAATATTTGATTGCCTTCATCGTTCATTTACTCGTGGTTCAAGTGTTTCTGATGCAGAATCAGTTGAAAGCAACTGCATGGGATCTTGGGATTGTGCAAACAATACTTGTATAGCACATTCACTTTTTGGAATTGAACATTTTTGA 3111 0.414 MGRLLPKLQRLLPKNVDDEWIEMIHNCSWKPLDVSAAVKMLESKVKFSGSSFPEDLYLDHHTQEYYDCLKDANNSYHEKEALGYSFHNCQTDSRDYCRIAESDIRGGVENQGCISYPLADSWPVSDDSERAKLLEKIHAVFELLIRHKHLAASHLNKVIQFTVGEIQGLAAGSQLINHGVDLTPMCICFLGVSQLKKILQFLQELSHSCGLGRYADKSSGPVNDLHNISQGPEIRENIVLNGDALCLLLDESLLVTQATPGTAQGTVLDDVTAPSSHDVISCDNDAFLPWIYSGSPVGDQLTSWMRNKEDKKHQGTEIIKMLEKEFYQLQNLCEKKSDRISYEEALQTVEDLCLEEGKKRENVGDFVQRSYESVLRKRREELIEYEHDVTYVSNRFELDAISNVLQEAEAMNVNQFGYEETYGGVTAQLCDLESGEEEELRMKDYLHQMDGCIEIAIQKLKEHLSIELSKIDARIIRDITDMQQMEFKLGPLSAYDYRAILLPLVKSYLRALLEDLAEKDAIEKSDAAREAFLAELARDSKKAKGGSENLRHAEKTKEKKKNKDHRKPKDMKSTSGHELLLLQATSPDSSSVAPSSFFQDPEVGSMNGDDLEQQDEEYRRKIELEEEEKKLEETLEFQRRIENEAKQKHLAELQKKSSGICLEEVADKLLDVQLKAVAEGPDVHEHEQLAKENGCPRNLDSVLITIINGSMVPSKSSADSAAQKINYLHQSKVKQDLANGVAPENGLQLSDRRAGKKHKRHKNTSRVVDGKLESVPLEKNIEDAHTDSNLREPVKFHSNQDGNNVWENNGSTAMKDLHMEDEEEERFQADLKKAVRQSLDTYQACGKLPMNSSLRMPQRASSQVGSLGFPPEEDATEDMNGAILLGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLGRSRSEHDHVGIPCVVCALSEIFTALDLASKDSRREAVAPTSLRIALSNLYPDSNFFQEGQMNDASEVLAVIFDCLHRSFTRGSSVSDAESVESNCMGSWDCANNTCIAHSLFGIEHF* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1693 1036 Pfam Ubiquitin carboxyl-terminal hydrolase 888 1033 IPR001394 GO:0004843|GO:0016579
Dod05g1693 1036 MobiDBLite consensus disorder prediction 578 602 - -
Dod05g1693 1036 MobiDBLite consensus disorder prediction 543 557 - -
Dod05g1693 1036 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1036 - -
Dod05g1693 1036 Coils Coil 608 648 - -
Dod05g1693 1036 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 887 1036 IPR028889 -
Dod05g1693 1036 SUPERFAMILY Cysteine proteinases 887 1033 IPR038765 -
Dod05g1693 1036 Pfam Protein of unknown function (DUF629) 1 454 IPR006865 -
Dod05g1693 1036 MobiDBLite consensus disorder prediction 543 613 - -
Dod05g1693 1036 Gene3D Cysteine proteinases 875 1035 - -
Dod05g1693 1036 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1036 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1693 Dod-Chr5 42233882 42239943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1693 1 1034 C2H2 Transcription Factor Family AT3G47890 50.286 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1693 - - adu:107493676 1610.51