Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1692 ATGAACTGCTACCATTGTGGCCATGAGTCCAGACATTTGAAGTATACTTCCTTCTTTCACAATATAAATGCCAATGCCCTACGCACAATGAAGGTTATGTGTTCTGAGAGTTCCTTTGCTGAGCTTTTGAATTTTGTGGAGATGAACCATCAGTTGGCTTGTGATCTAGAAGTTGGTGGCTGTGGCAAGCTCAACTACATCCATCACTTCCTTTCAACTCCTCCGCATGTTTTTATGACAGCCCTCAGCACAGAGATAGACATCAGTGTCCTTTATCGAGGCTTAGATCCTAAAAGCACCCATAGCTTGGTTTCAGTGGTTTGCTACTATGGCCAACATTATCATTGCTTTGCCTACAGTCATGACCATGAACAATGGATTATGTATGATGATAAGACTGTCAAGATAATTGGTAGATGGGCGGATGTTCTTACAATGTGTGAAAGAGGGCATTTACAGCCTCAGGTTTTGGTATTTGCTAGAACACCACGACGTGTTGGGGTTGGCCATGTGATGGAACATGCTGTATACGAGGATACATGCGTCAGTGGTGGAGACATGACCCTTAAAGCTGGCACAACCCAAGCCTGTGCGGCATGCAAATTCCAGAGGCGAAAGTGCACTCGTGAGTGCCTCCTTGCTCCATACTTCCCTGCAGACCAACCCAAGGTGTTCCTTAATGTCCACAAGCTATTTGGAGTGAGCAACATCGTAAAGATATTAAAGGACTTGGAGCCTAGTCAGAAGAAAATGGCTATGGACTCCATCATTATTCAAGCAAATTATAGGGACAAGTACCCTGTGCGTGGCTGTTGGCAGGAAATATGCAGGCTACAATACCAAATATGGCTAGTGGAACAAGAGCTACATGCAGCTTATCAACAGCTTGAGATGTACAGGCAACACCAGCAGCAGCATCAAGGGATTCAAGGCCTGCCAGTGCCTGATGATCTGACTTCACAATTAGAGTTGGGAATGGCGACTCGTACCAATGTCCTTCCACTCTACAATAATGCCCAACAGCCAGAGACTTACCGCAACACAGTGGCTGCTTTGCCTGTCTCGCAGCAGGATTCCTATTCCAACGGCACTAGCGTGGATTATAACTCCCTTTACATGGAATCCAAGGATAACCCCAATAATCCTTTGTGGGTATCCTACGCAAATAGCAATAGCAATTCCATGGCAATGCAACCTCAGCTGCTTGCCTCACAGCCAGTAGCCATCCAGCAAGAAGCTGTTGAAGATTATGATGAGATGCACCCAAGTTTTTATACAATTGATGATAGGCAATCATACATTTATTCCAAGGAGGCTTATGAGTCAAGCTCAGAAGAATCGCTGAAAGATACGAGAAACTGCACTGAGCATGTTTCTGAGAATGAATTAAAGAGCGCCGCTGCATGCTTCAGCCTTACCAGTGTCAACTAA 1431 0.4514 MNCYHCGHESRHLKYTSFFHNINANALRTMKVMCSESSFAELLNFVEMNHQLACDLEVGGCGKLNYIHHFLSTPPHVFMTALSTEIDISVLYRGLDPKSTHSLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKIIGRWADVLTMCERGHLQPQVLVFARTPRRVGVGHVMEHAVYEDTCVSGGDMTLKAGTTQACAACKFQRRKCTRECLLAPYFPADQPKVFLNVHKLFGVSNIVKILKDLEPSQKKMAMDSIIIQANYRDKYPVRGCWQEICRLQYQIWLVEQELHAAYQQLEMYRQHQQQHQGIQGLPVPDDLTSQLELGMATRTNVLPLYNNAQQPETYRNTVAALPVSQQDSYSNGTSVDYNSLYMESKDNPNNPLWVSYANSNSNSMAMQPQLLASQPVAIQQEAVEDYDEMHPSFYTIDDRQSYIYSKEAYESSSEESLKDTRNCTEHVSENELKSAAACFSLTSVN* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1692 476 Gene3D Cysteine proteinases 1 163 - -
Dod05g1692 476 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 159 - -
Dod05g1692 476 SUPERFAMILY Cysteine proteinases 2 159 IPR038765 -
Dod05g1692 476 CDD Peptidase_C19 96 137 - -
Dod05g1692 476 ProSiteProfiles LOB domain profile. 195 296 IPR004883 -
Dod05g1692 476 Pfam Lateral organ boundaries (LOB) domain 196 292 IPR004883 -
Dod05g1692 476 Pfam Ubiquitin carboxyl-terminal hydrolase 95 139 IPR001394 GO:0004843|GO:0016579
Dod05g1692 476 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1692 Dod-Chr5 42228753 42233877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1692 1 161 C2H2 Transcription Factor Family AT3G47910 72.778 8.63e-88 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod05g1692 LOB 7.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1692 - - lang:109357116 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1692 05 42228753 42233877 Dod02g2520 02 55637911 55638732 ECH
Dod05g1692 05 42228753 42233877 Dod05g1692 05 42228753 42233877 ECH