Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1691 ATGGACGGCGGCGATCCTTCGCTATCCGATAACGATGAGGAGGAAAACGACTTCTCGTCGGACATTCTGTCTCGAGTTCGACTCGTTGACGCTCCCATATTGCTCTTCGTTTGTTTTCACAACGCTCTGCGCTCTGAACTCCGCCAGCTCCGCCGTCTGGCGGAAACGGCGTCGTTGGAGGTCCTGCCACCGGAACGCTGCCGAGAAGTGATTCTCAAGTTTCAGCGCCGATTCCGGTTTCTTAAACTCGCTCTCAAGTATCACTGCGCTGCCGAAGACGAGGTTATCTTCCTTGCACTGGATACACATGTGAAAAATGTGGTATGTACATATTCCCTTGAACACAACAGCACCGATGACCTCTTCGAGTCTATCTTTCACTTCTTGGATGAGTTGATGGGTCTTAATAAGAACATTTCCAAGCTGTTCCAAGAACTTGTGTCCTGCATCGGCATCTTGCAAACCTCCATTTGCCAACATATGCTGAAAGAAGAAGAGCAGGTTTTTCCTTTGTTGATGCAGAAATTATCTACTAAAGAACAGGCTTCACTTGTGTGGCAGTTCATATGTAGTGTTCCTGTAATGATGCTCAAGGAATTTTTGCCATGGATGGTATCCTCCCTTTCCGCAAATAAAAAAGCAGAAGTTACTCAGTGTTTTAGTGAAATTGCACCAATGGAAACAACACTGCAAGAGGTTTTGGTTACTTGGATTGAAAGCAACAACGAAATCTTTGCTGGGGCCTACTTTCAGAGTGAAGAAGTTCAAGGTGTTGATGGATCTCTACATATAGCAAAATCAATTGGGTTGGGTTCTTGCAATAGGAACTCCAAAGAAATTTCAAGTTGGCCAAAAGCGAATGGCCTAGAAAATGAAGATGGGGTCACCCAGGTTAATGTTCTTCACCTTTGGCATGATGCCATCAAGAAAGATTTGGAAGAAATTCTGAAAGAACTTTATCTGATAAGAAACTCTAGCTGTTTTCAGAATTTAGAATCAATACTTATCCAACTAAAATTCTTTGTCGATGTCCTCATGTTTTACAGCAATGCTCAGAAGAAATTCTTTCATCCAATATTGAAAAAACTTGCCCATGACTGGTTGGCCAAGTCTATTGAACAATTGGTTGGTGTAAGTCACATTGAAGAGTTACAGCAGTCGTTATTCTATAACTCAGAAAGTGGAATGCCTTTGTGCAAATTCATAGAGAAGCTTTGCCAAAAGCTTGAATCATTTCTATTGGGACTCAACAAACAATTTGCTTTTCAAGAAACTGAGGTATTTCCTGTCATTAGAAAGAATTGCGGCAATGGGATGCAAGAGAGACTTCTGAGCTTGACCCTGTATATGATGCCACTAGGGTTGTTAAAGTGTGTTATAACTTGGTTTTCGGTTCACTTGTGTGAAAATGAATCCAGGTCCATTCTCTATTTCATAAAGAAAGGAAATCCTTTGGTCTGTAAAGATTTTGCATCACTGTTACATGAGTGGTTCCGCATTGGCTATTCAGGTAAAACCTCTATTGAAAAATTTCGAGAGGACTTGCACCATATGTTCAAAAGCAGATACTCTTTTTTACCTGAGAAAATCAAGGAAGCTCCTGGTTTTTCTTTCTTAAATTCTGACAATCATCCTCACAAGGCCCCTGGCAAGAATTGTTTATCCTATTCCTCATCTTCTAGCAACAAGGCAAGCAAGTATGAGACACCATACTCCACAGGAATTAATCTGCATATATTTTTCCCTGCCACAGTTGTGAAGCTACATCAGCATTCAGGATTTCATGCAGCAAATGGTTCTTCTATTTCCTTTCTTGAAGATCCAAAACCAATTGACCTAATATTTTTCTTTCACAAGGCTATCAAGAAAGATTTGGACTACCTGGTTCTTGGCTCAGCTCAGTTAGAAGAAAATGCTGAGTTGCTTATGGATTTCCACAAGAGATTCCATCTCATATGCTTTCTCCATCAAATCCATAGTGATGCAGAGGATGAAATAGTTTTTCCAGCCTTGGAGGCAAGTGGTAACCTCAAAAACATCAGCCATGCCTACACCTTTGATCACAAAATTGAAGTTGAGCACTTCAATAAAATATCCGGCATACTTGATAAGATGTCTGAATTACGAATTTCATTTTCTACTGTTGATTCAAATATAAGGGAAAAGAGATTGCTAAGGCATCGTCATTTATGCAGGAAGCTGCAAGAAATGTGCAAATCAATGCATAAATTACTTTCTGGCCATATTGACCGCGAGGAAGTTGAAATTTGGCATTTAATTAGAGAATTCTTCTCGAATCAGGAGCAAGGGAAGATCATAGGGTGTGTGCTCGGAAGAATAAGAGCAGAGATATTACAAGATATGATTCCTTGGGTAATGGCATCTTTAACAAAGGAAGAACAGCATGTTTTAATGTTCTTATGGTCCCTGGCTACCAAAAATACAATGTTCCATGAATGGTTAGGTGAATGGTGGGATGGGTACAGTATCGCTAAGGCAGCAGACAGAGCAAACAATGACCCTATACAGACTGTTGAGCCACTGGAGATTATATCCAAATACTTATCTGAAGAGTTTCTTAATGAATCACGAGAAGAATCCTGTTCCAACAAAAGCGTAAACTGTTTGCAGAAGGATCATATTGAAAATAATGTTGAGCTGTGTGACAACAATTTTGATGGCAAAGTTAAGGTTCAAACTGCAGAGCAAAATAATAAAGAGTTTTCAAAATGCGAAAGTCACTTTCATGATGATAATAAAAAACATGCTTCCAATGAAGTAAGAAAAGATATCACAAATCCAATTAATAATGAAGGTCAATCTTTTCTATTTCCTCACAACTCCAGGCATTACGACCGACTTCTGAAACTCAGTCAAGATGATCTGGAGAAGGCAATAAGAAGGGTGTCTCGTGACACTTGCTTAGATCCTCAGAAGAAGTCATACATAATACAGAACCTGCTAATGAGCCGCTGGATTGTTAGACAGAAGATCTCTTTTACAGAAGTCACTGTCAAAAGTGAGGGGCAGGACTTTCCTGGGAAGCATCCATCTTACAGGGACCCTCTCAAACAAATCTATGGATGCAAACATTACAAAAGAAACTGTAAGCTCCTCGCCCCTTGTTGCAACCAACTTCATACTTGCATACATTGCCATAATGAGGAATCAGACCATTCAATTGACAGGAAATCTCTTACAAAGATGATGTGCATGAAGTGCTTGATGATTCAATCAATCGGTGACATATGCTCGACAGTTTCTTGCTGTAACTTAACCATGGCAAAATATTATTGCAGCATCTGCAAATTATTTGATGATGAAAGGGATATTTACCACTGTCCCTATTGTAACCTGTGCCGAGTTGGAAAGGGCTTGGGTGTAGACTACTTTCACTGTATGAATTGTAATGCCTGTATGTCTCGTTCTCTTATGATACATACATGCAGGGAGAAATCTTTAGAGGATAACTGCCCAATTTGTCATGAATATATCTTCACATCTTGTTCTCCGGTAAAAGCCCTCCCATGTGGTCATGCGATGCACTCAACATGTTTTCAGGAATATACCTGCTTTAACTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTATATTTTAGGATGTTGGATGCATTGTTGGTTGAAGAAAAAATTTCTGATGAGCTTTCAGGTCAAACTCAGGTTATACTATGTAATGACTGCGAAAAGAAAGGAGCCGCTCCCTTCCACTGGCTTTACCACAAATGCCCTTATTGTGGTTCCTACAACACCAGAGTTGTATGA 3795 0.4008 MDGGDPSLSDNDEEENDFSSDILSRVRLVDAPILLFVCFHNALRSELRQLRRLAETASLEVLPPERCREVILKFQRRFRFLKLALKYHCAAEDEVIFLALDTHVKNVVCTYSLEHNSTDDLFESIFHFLDELMGLNKNISKLFQELVSCIGILQTSICQHMLKEEEQVFPLLMQKLSTKEQASLVWQFICSVPVMMLKEFLPWMVSSLSANKKAEVTQCFSEIAPMETTLQEVLVTWIESNNEIFAGAYFQSEEVQGVDGSLHIAKSIGLGSCNRNSKEISSWPKANGLENEDGVTQVNVLHLWHDAIKKDLEEILKELYLIRNSSCFQNLESILIQLKFFVDVLMFYSNAQKKFFHPILKKLAHDWLAKSIEQLVGVSHIEELQQSLFYNSESGMPLCKFIEKLCQKLESFLLGLNKQFAFQETEVFPVIRKNCGNGMQERLLSLTLYMMPLGLLKCVITWFSVHLCENESRSILYFIKKGNPLVCKDFASLLHEWFRIGYSGKTSIEKFREDLHHMFKSRYSFLPEKIKEAPGFSFLNSDNHPHKAPGKNCLSYSSSSSNKASKYETPYSTGINLHIFFPATVVKLHQHSGFHAANGSSISFLEDPKPIDLIFFFHKAIKKDLDYLVLGSAQLEENAELLMDFHKRFHLICFLHQIHSDAEDEIVFPALEASGNLKNISHAYTFDHKIEVEHFNKISGILDKMSELRISFSTVDSNIREKRLLRHRHLCRKLQEMCKSMHKLLSGHIDREEVEIWHLIREFFSNQEQGKIIGCVLGRIRAEILQDMIPWVMASLTKEEQHVLMFLWSLATKNTMFHEWLGEWWDGYSIAKAADRANNDPIQTVEPLEIISKYLSEEFLNESREESCSNKSVNCLQKDHIENNVELCDNNFDGKVKVQTAEQNNKEFSKCESHFHDDNKKHASNEVRKDITNPINNEGQSFLFPHNSRHYDRLLKLSQDDLEKAIRRVSRDTCLDPQKKSYIIQNLLMSRWIVRQKISFTEVTVKSEGQDFPGKHPSYRDPLKQIYGCKHYKRNCKLLAPCCNQLHTCIHCHNEESDHSIDRKSLTKMMCMKCLMIQSIGDICSTVSCCNLTMAKYYCSICKLFDDERDIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLMIHTCREKSLEDNCPICHEYIFTSCSPVKALPCGHAMHSTCFQEYTCFNYTCPICSKSLGDMQVYFRMLDALLVEEKISDELSGQTQVILCNDCEKKGAAPFHWLYHKCPYCGSYNTRVV* 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1691 1264 ProSiteProfiles Zinc finger CHY-type profile. 1022 1091 IPR008913 GO:0008270
Dod05g1691 1264 SUPERFAMILY RING/U-box 1146 1204 - -
Dod05g1691 1264 SMART ring_2 1158 1199 IPR001841 -
Dod05g1691 1264 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 23 1264 - -
Dod05g1691 1264 CDD Hr-like 39 170 - -
Dod05g1691 1264 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 23 1264 - -
Dod05g1691 1264 CDD RING-H2_Pirh2 1157 1200 - -
Dod05g1691 1264 Gene3D - 1229 1264 - -
Dod05g1691 1264 SUPERFAMILY Zinc hairpin stack 1095 1149 IPR037275 -
Dod05g1691 1264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1151 1202 IPR013083 -
Dod05g1691 1264 Coils Coil 40 60 - -
Dod05g1691 1264 Pfam Hemerythrin HHE cation binding domain 40 172 IPR012312 -
Dod05g1691 1264 Pfam Zinc-ribbon 1205 1262 IPR039512 -
Dod05g1691 1264 ProSiteProfiles Zinc finger CTCHY-type profile. 1094 1157 IPR017921 -
Dod05g1691 1264 Gene3D nmb1532 protein domain like 31 190 - -
Dod05g1691 1264 Gene3D nmb1532 protein domain like 295 445 - -
Dod05g1691 1264 Gene3D nmb1532 protein domain like 606 779 - -
Dod05g1691 1264 Pfam CHY zinc finger 1029 1104 IPR008913 GO:0008270
Dod05g1691 1264 ProSiteProfiles Zinc finger RING-type profile. 1158 1200 IPR001841 -
Dod05g1691 1264 SUPERFAMILY CHY zinc finger-like 1020 1086 IPR037274 GO:0008270
Dod05g1691 1264 CDD Hr-like 612 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1691 Dod-Chr5 42211626 42226843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1691 609 853 C2H2 Transcription Factor Family AT3G18290 38.996 2.76e-48 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1691 K16276 - gmx:100802706 1982.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1691 05 42211626 42226843 Dod05g1691 05 42211626 42226843 ECH