Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1678 ATGTCCCGCGCCGCCGCAGACTCCGCTGCCTCCGGCGAAGCCCCCGCCGCCGGCGAGATCATGCTGTTCGGTGTTCGCGTCGTGGTTGACTCGATGAGGAAAAGCGTGAGTATGAACAATCTCTCTCAGTACGTGCATCCTCAAGATGCCTCCAACAACAACAGCAGCAACAAAGACGCCGTCTCCGTCGCCGTTGCCAGCGGCGGTTACGCCTCCGCCGACGACGCGGCTCCTCACAACTCCGGCAAGCACCGCGAGCGCGAGCGCAAACGAGGTGTTCCGTGGACGGAGGAAGAGCACAAGCTGTTCCTGGTTGGACTGCAGAAGGTAGGGAAAGGTGATTGGAGGGGAATCTCGAGGAACTACGTGAAGACGAGGACTCCGACGCAGGTGGCCAGCCACGCTCAGAAGTACTTCCTCCGGCGGAGCAACCTCAACCGCCGTCGCCGTAGATCCAGCCTCTTTGACATCACCACCGACTCTGTCTCTGGAATCCCAATGGAGGAAGAGCAGATCCAGAATGAAGATAGTGTGTGCCCTGCAGCCCTTGAGAGCAGCAACACCAATGGATTCCCAATGGTGCCGGTATATCCGTTGGGTGTTGGTAATGGAATGATTTCAGTTCAAGCTGGGAATCCAGTGGAAGAACTCACTCTGGGACAAGGAAACATGGAACACATTGCCCCAACAACCAAGTTAATCCGTCCAATTCCGGTTGTACCAAATCCTAAAGCCTCTGATGTCACCTCCAGCACGAGTTCAGCTGCTGACCCACCAACACTGTCCCTCGGACTATCCTTCACATCTGATCAAAGGCAGACATCGACAAGACTCTCAGCTTTACATGCAATGCCCTGTTTAAATAACGGAGATAGCAACATCATAAGTGTTGCCTGA 897 0.5518 MSRAAADSAASGEAPAAGEIMLFGVRVVVDSMRKSVSMNNLSQYVHPQDASNNNSSNKDAVSVAVASGGYASADDAAPHNSGKHRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVSGIPMEEEQIQNEDSVCPAALESSNTNGFPMVPVYPLGVGNGMISVQAGNPVEELTLGQGNMEHIAPTTKLIRPIPVVPNPKASDVTSSTSSAADPPTLSLGLSFTSDQRQTSTRLSALHAMPCLNNGDSNIISVA* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1678 298 MobiDBLite consensus disorder prediction 78 93 - -
Dod05g1678 298 Gene3D - 93 145 - -
Dod05g1678 298 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Dod05g1678 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Dod05g1678 298 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Dod05g1678 298 MobiDBLite consensus disorder prediction 70 93 - -
Dod05g1678 298 SMART sant 91 141 IPR001005 -
Dod05g1678 298 MobiDBLite consensus disorder prediction 244 268 - -
Dod05g1678 298 ProSiteProfiles SANT domain profile. 90 143 IPR017884 -
Dod05g1678 298 CDD SANT 94 139 IPR001005 -
Dod05g1678 298 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 16 298 - -
Dod05g1678 298 PANTHER KIN2 16 298 - -
Dod05g1678 298 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Dod05g1678 298 MobiDBLite consensus disorder prediction 243 268 - -
Dod05g1678 298 SUPERFAMILY Homeodomain-like 89 144 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1678 Dod-Chr5 42048837 42051034 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod05g1678 Myb_DNA-binding 8.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1678 - - aip:107632799 387.882