Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1662 ATGGCTTCGTCTTGTGCATCGGTCCCAGATCCTTCTTCCAGGCACCCTACCTACAACCGCAAGCAAAAGTCCCTTGGCCTCTTATGCACCAATTTCTTGAGCTTGTATAATCGTGACGGCATTCACTTGATCGGGCTCGACGATGCCGCCACCCGCTTAGGTGTTGAAAGAAGACGGATCTATGATATAGTCAACGTTCTCGAGAGCATCGGGGTTCTAGCAAGAAAGGCCAAGAATCAGTACACGTGGAAAGGATTTGCGGCTATTCCCGGGGCTTTGCAGGAGCTCAAGGATGAGGGTTTAAGGGAGAATCCATATGCTCTCGAGGGTGGCAACGACATCGCAAAAGTTTCCGATGACGAGGATGATGAAGAATCATTTTCGAATCCCAGCACTGGAAGTCAGAATGACAGGTCCAATCTAAATTTTGCACTTCCCAGATCCCTCAAGAATGATAATCGAAGGGAAAAATCTCTGGCGCTGCTCACACAGAATTTTGTCAAGCTCTTTGTCTGCTCTAACATAGAAATTATCTCCCTTGATGAGGCCGCAAAGTTGTTGCTTGGGGATGCACATAATTCATCAATAATGAGAACAAAAGTCAGACGCCTATATGATATTGCAAATGTGCTGTCCTCTATGAGCCTTATTGAGAAGACCCATACGACAGATACCAGAAAACCAGCATTCAGATGGCTGGGCTTGAGAGGGAATGAGTCTCTACACAATTCAAATGCCAACGAGTCTAGGAAAAGGGCGTTTGGAAGTGATGTCACAAACATCAGTTTTGAGAGGAACACAGTGAATTTATTCACGAATGTGGACTTCAGCCAGAACCCTAATAAGAAGCCCAAAAAACTGGAAAATGATAGTGGCCTAGGTCTTGCAGATAAAAGCAGCAACATACAACAAGGCACGAAACAGGCTTCAAGGAGTTACCGGTTTGGTCCTTTTGCTCCAGCCTATGTGCCCAAAGCTGGAACCTCCGAGAATAATAATAATGTGAAGCAGGTGCATGATTGGGACAGTCTAGCAACTGAACATCGTCCTCAGTATCAAAATCAAGCTTTGAGAGAACTGTTCTCCCATTACATGGAAGCATGGAGATCGTGGTACTCGGAAGTCGCTGGGAAGCGACCATTACAAATTTTGTAA 1155 0.4554 MASSCASVPDPSSRHPTYNRKQKSLGLLCTNFLSLYNRDGIHLIGLDDAATRLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFAAIPGALQELKDEGLRENPYALEGGNDIAKVSDDEDDEESFSNPSTGSQNDRSNLNFALPRSLKNDNRREKSLALLTQNFVKLFVCSNIEIISLDEAAKLLLGDAHNSSIMRTKVRRLYDIANVLSSMSLIEKTHTTDTRKPAFRWLGLRGNESLHNSNANESRKRAFGSDVTNISFERNTVNLFTNVDFSQNPNKKPKKLENDSGLGLADKSSNIQQGTKQASRSYRFGPFAPAYVPKAGTSENNNNVKQVHDWDSLATEHRPQYQNQALRELFSHYMEAWRSWYSEVAGKRPLQIL* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1662 384 SUPERFAMILY "Winged helix" DNA-binding domain 156 235 IPR036390 -
Dod05g1662 384 MobiDBLite consensus disorder prediction 111 141 - -
Dod05g1662 384 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667|GO:0006355
Dod05g1662 384 SMART E2F_TDP_2 20 85 IPR003316 GO:0005667|GO:0006355
Dod05g1662 384 Pfam E2F/DP family winged-helix DNA-binding domain 21 85 IPR003316 GO:0005667|GO:0006355
Dod05g1662 384 Pfam E2F/DP family winged-helix DNA-binding domain 156 234 IPR003316 GO:0005667|GO:0006355
Dod05g1662 384 Gene3D - 149 236 IPR036388 -
Dod05g1662 384 Gene3D - 15 87 IPR036388 -
Dod05g1662 384 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 1 375 - -
Dod05g1662 384 MobiDBLite consensus disorder prediction 275 310 - -
Dod05g1662 384 PANTHER TRANSCRIPTION FACTOR E2F 1 375 IPR015633 GO:0000978|GO:0006357
Dod05g1662 384 SUPERFAMILY "Winged helix" DNA-binding domain 19 83 IPR036390 -
Dod05g1662 384 MobiDBLite consensus disorder prediction 294 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1662 Dod-Chr5 41894763 41898474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1662 2 90 E2F-DP Transcription Factor Family AT3G48160 34.286 1.73e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Dod05g1662 E2F_TDP 2.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1662 K09391 - gmx:100795252 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1662 05 41894763 41898474 Dod05g1662 05 41894763 41898474 ECH
Dod05g1662 05 41894763 41898474 Dod09g0323 09 4926725 4937178 PCT