Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1644 ATGCGCAACATTAATCCACTTGAACCCCATCAAAAGAGTGCAGGTATTGGGAATTTCAAGTACTCATCTCCTCATCAATCTCCTTCATCTCCATACCAAACTCCTTCTTATGATAGTGATTTAAGTAATCAGCAAGAAGCAACACTGCCATCATCTCTTAGCAGAGTCAGTCCACTCATTCTGTTGGTTATGATAGTCCTAGCAGTTATCTTCTTTGTCTATGGACTTGTCCATTTGGTTCTATGGTTCCTCATGAAAAGGCCATCGTCTTCATTATCTCTTTACAATTCCAATAGGTTCCCAGCAGAATCCGCACGCACCCGTGCTCTTCAGAGGCAGCTTCAACAGCTCTTCCGGATGCATGACTCAGGCCTAGACCAATCCCTCATAGATGCACTTCCTGTTTTCTACTACCAAGACTTGTTGGGCTTGAAGGAACCCTTTGATTGTGCTGTGTGTCTGTGTGAGTTTTCTGAGGAGGACAAGCTGAGGCTGGTTCCAATATGCAGCCATGCCTTTCACATGAGTTGCCTTGACACGTGGCTTCTCTCAAACTCAACTTGCCCTCTTTGTAGAGCAACACTCTCCAGCAGCAGCTCCATGGAGAATCCAATGTTTGGTGCTGATGAGAATTCTTGGGTTGGGGCAAATGGGTTGAGAGGGACTTTTTGTGAGGAAGAGAATAATGTGTGCTCACACAGTCAAGGACAAGTAACTGAAGAGGAACAAGGTTGTGGGAAAAGGGTCTTTTCTGTGAGGCTTGGAAAGTTCAGAAACAGTGGAGTATTATTAGATGGTGGTAGTAGTAGTTGTAGTTTGGATGGGAGAAGATGCTACTCCATGGGTTCATATCAGTATGTGGTCCGTGATTCAAATCTGCAGGTGGTGTTATCTCAATCTCATGATGATGACATAGGTGGTGGTGAAGAATTAGGTGAGATGAGTAAGGGGTACCTATGTGATGTTTCAGAAAATGGGGATGAGGATGGAAAGAAGATAGGCAACAACAGAACAAAAGGTGAGAGCTTCTCTGTTTCCAAGATCTGGCTTTGGTCCAAGAAGAGCAAATATCATGGTTCCATTGCTGATTTCCCTTGA 1098 0.4426 MRNINPLEPHQKSAGIGNFKYSSPHQSPSSPYQTPSYDSDLSNQQEATLPSSLSRVSPLILLVMIVLAVIFFVYGLVHLVLWFLMKRPSSSLSLYNSNRFPAESARTRALQRQLQQLFRMHDSGLDQSLIDALPVFYYQDLLGLKEPFDCAVCLCEFSEEDKLRLVPICSHAFHMSCLDTWLLSNSTCPLCRATLSSSSSMENPMFGADENSWVGANGLRGTFCEEENNVCSHSQGQVTEEEQGCGKRVFSVRLGKFRNSGVLLDGGSSSCSLDGRRCYSMGSYQYVVRDSNLQVVLSQSHDDDIGGGEELGEMSKGYLCDVSENGDEDGKKIGNNRTKGESFSVSKIWLWSKKSKYHGSIADFP* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1644 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 17 365 - -
Dod05g1644 365 SUPERFAMILY RING/U-box 129 198 - -
Dod05g1644 365 MobiDBLite consensus disorder prediction 16 43 - -
Dod05g1644 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 201 IPR013083 -
Dod05g1644 365 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 365 - -
Dod05g1644 365 MobiDBLite consensus disorder prediction 1 43 - -
Dod05g1644 365 SMART ring_2 150 191 IPR001841 -
Dod05g1644 365 CDD RING-H2_PA-TM-RING 149 192 - -
Dod05g1644 365 Pfam Ring finger domain 149 192 IPR001841 -
Dod05g1644 365 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1644 Dod-Chr5 41592178 41594534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1644 75 362 C3H Transcription Factor Family AT2G18650 39.748 5.84e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1644 - - aprc:113846147 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1644 05 41592178 41594534 Dod05g1644 05 41592178 41594534 ECH