Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1633 ATGATTCATACTCCCAACAACAATCAAAGGGACCGCCGTGTCCTATCATTCCCGGCGGTGCACCCTTGCGAAGGGATATCTCTGGCAACCCTCATCTCCTCTCTCATCACACTCTCCCAAAACATATGCAGTTACCAACACAGCTTCTTCGCCACACAGAGAAGAAACGCCAGAGAAGCAATGCGCCAAGTCAGCATTCTCCTAATCTTCCTCCACGAAATCCAAGAACGTCGTCTATTCATCCCCCAAACCACCGTTCTCAGCTTCTCGGAGCTCCACTTCACGTTCCAGAAGCTTCTATATTTGCTGCAAGACTGTTCCCGCGAAGGTGCGAGACTCTTGATGCTGGCCAAGTCCCAACACGTGGCTTCCCAGTTCCAATCCTTCATTCGCGCAGTGGCTACCGTACTCGACGTTCTTCTTCCACTCCACAGTATCGAAGTTTGCGGCGAAGTGAAGGAGCTAGTGGAGCTTCTAGCAAAGCAAGCTAGAAAAGCAAACTTAGAACACGACCCAAACGATGAACGCGCGAGCAAGAAACTCCACTCCGTTTTGAAACAGTTCGAGAAGGGAACCGAACCGGACGCGAATGCATTGCGTGGAATCCTCGACTACCTCGAAATCAAAAAATGGACGGAATGTGACAGCGAGGTGAAGCTCCTAGAGAACGAAATCGGGTTCGAGTACAGTGACTCATCCAACGAGCGAGATGTTCCTCTTCTGAGTAGCTTGGTAGGGTTCATGAGTTACTGCAGGGTAGTGATATTCGAAACACTAGACTTCACATTCCCGTTGCGCATCATTAACAATAATAACAACAGTGATCAAAACTCCGAAGCGAGGTGCAGCACGGAAATGATGATCACGTGCGTGAATCCAGAGGACTTTCGTTGTCCGATTTCGCTCGAGCTAATGACAGATCCGGTTACAGTCTCAACAGGACAAACCTACGACAGAGCCTCCATCAAGAAATGGTTGAAAGCAGGGAACACAATATGCCCCAAAACAGGGGAGAAGCTCGCAAACACAGACCTAGTCCCTAACACAACGCTCAAGAGGCTCATCCAACAGTTCTGCACCGACAACGGCATTTCACTGTCCAAAACAAGCAACCGCAGCCGCGACATAGCGAGGACAATCGTACCAGGTAGTTCCGCTAACGCTCACGCTATGCAGTTCCTGTCGTGGTTCCTCACCCGGAGGCTCGTGTTCGGAACCGAGGAACAGAGAACCAAAGCGGCTTACGAGGTTCGGGTGCTTGCAAGGTCCAACGTGTTCAACAGGGCGTGCTTGATTGAAATTGGAACCGTTCCTCCTCTTCTGGATCTTCTTTCCAGTACCGTTGATAGGTCCACGCAAGAGAACGCAATCTCTGCTCTGTTGAAGCTTTCAAAGCACGCCACTGGACCACAAAACATCATGGACTGTGGTGGCCTAACTCCGATTCTTAATGTCCTCAAAAAAGGACTTTCCCTCGAAGTTCGTCAAATCGCAGCCGCCACGATGTTTTACCTTGCTTCGGTTAAGGAATACAGGAAAGTAATAGGTGAAAATCGCGAGGTGATTCCTGCTTTGGTGGACTTGGTGAATGAAGGGACAGCGTGTGGGAAGAAGAATGCTGTGGTTGCGATTTACGGTTTGATTTTGGTTCCTAGGAATCATCAAAGGGCGATCGAAGCGGGTGTTGTTCACGCGCTCGTTGATGTTTTGCGTTCCTCGGATAAGGACGAGCTTGTAACGGAGTGTTTGGCTGTTCTTGCTGTGTTGGCGGAGAATGTGGACGGGGCGCAAGCTATATTGCGTGCCTCGGCGTTGTCGTTGGTGACTGGGATGTTGCAAACTGCGTCGTCTCGTGCGGGGAAAGAGCACTCTGCTTCGATCCTTCTGTCGCTGTGCGTCCACGTTGGTGCGGAGGTTGTGGAAGTTTTGGCAAAGGATCCTTCGGTGATGCCTCTGCTTTATTCGCTTCTCACGGAGGGTACTTCTCATGCGGCGAAGAAAGCGCGGTTCCTCATCAAAGTACTGCAGGATTTTAATGAAACGAGAGCTTCTGGATTGAAAGGTTCGTCAGTTCCACAGGAACGATCCCTCCACGTTTGGTGA 2103 0.504 MIHTPNNNQRDRRVLSFPAVHPCEGISLATLISSLITLSQNICSYQHSFFATQRRNAREAMRQVSILLIFLHEIQERRLFIPQTTVLSFSELHFTFQKLLYLLQDCSREGARLLMLAKSQHVASQFQSFIRAVATVLDVLLPLHSIEVCGEVKELVELLAKQARKANLEHDPNDERASKKLHSVLKQFEKGTEPDANALRGILDYLEIKKWTECDSEVKLLENEIGFEYSDSSNERDVPLLSSLVGFMSYCRVVIFETLDFTFPLRIINNNNNSDQNSEARCSTEMMITCVNPEDFRCPISLELMTDPVTVSTGQTYDRASIKKWLKAGNTICPKTGEKLANTDLVPNTTLKRLIQQFCTDNGISLSKTSNRSRDIARTIVPGSSANAHAMQFLSWFLTRRLVFGTEEQRTKAAYEVRVLARSNVFNRACLIEIGTVPPLLDLLSSTVDRSTQENAISALLKLSKHATGPQNIMDCGGLTPILNVLKKGLSLEVRQIAAATMFYLASVKEYRKVIGENREVIPALVDLVNEGTACGKKNAVVAIYGLILVPRNHQRAIEAGVVHALVDVLRSSDKDELVTECLAVLAVLAENVDGAQAILRASALSLVTGMLQTASSRAGKEHSASILLSLCVHVGAEVVEVLAKDPSVMPLLYSLLTEGTSHAAKKARFLIKVLQDFNETRASGLKGSSVPQERSLHVW* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1633 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 478 IPR000225 GO:0005515
Dod05g1633 700 PANTHER OS07G0532750 PROTEIN 8 685 - -
Dod05g1633 700 SUPERFAMILY RING/U-box 293 365 - -
Dod05g1633 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 366 IPR013083 -
Dod05g1633 700 Gene3D - 367 686 IPR011989 -
Dod05g1633 700 ProSiteProfiles U-box domain profile. 291 365 IPR003613 GO:0004842|GO:0016567
Dod05g1633 700 CDD RING-Ubox_PUB 296 338 IPR045210 -
Dod05g1633 700 SMART arm_5 424 465 IPR000225 GO:0005515
Dod05g1633 700 SMART arm_5 466 507 IPR000225 GO:0005515
Dod05g1633 700 SMART arm_5 549 591 IPR000225 GO:0005515
Dod05g1633 700 Pfam U-box domain 293 362 IPR003613 GO:0004842|GO:0016567
Dod05g1633 700 SMART Ubox_2 295 358 IPR003613 GO:0004842|GO:0016567
Dod05g1633 700 PANTHER U BOX DOMAIN-CONTAINING 8 685 - -
Dod05g1633 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 561 604 IPR000225 GO:0005515
Dod05g1633 700 SUPERFAMILY ARM repeat 401 675 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1633 Dod-Chr5 41489435 41492161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1633 1 700 U-box Gene Family AT1G60190 38.256 4.27e-165 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1633 - - mtr:MTR_4g107010 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1633 05 41489435 41492161 Dod05g1633 05 41489435 41492161 ECH