Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1627 ATGGCTATTAGAGGCGTCGATTTCAAGTGGTACGATGGCTTCTTCTTGTCCATGCTCGCCACCAGTGTAATTATTGTAGCAATTAATTGGAAGCGGTACCATTCTTGTACATACCCTTTGCACATATGGATCGTGGTTGACTACACTACTGTGTTCATTTTCCGGCTTTTGATGTTTGTTGATAATGGACTTGCTGCCGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGGTATGCTCGATTCTGTGGAAGAGTAGCAGTCCTTTCAATCCTTGCATTGCTTCTCTACCCATTTCTGTGGGCTTGGACTATAATTGGTACCCTGTGGTTCAGCAGTGCCAAGAACTGCTTGCCTGAAGAGGGACAGAAATGGGGCTTCCTCATCTGGTTACTTTTTAGCTACTGTGGACTCTTTTGCATTGCTTGCATGTCAATAGGGAAGTGGTTGACACGAAGACAAGCACTCTTATTACGAGCGCAGCAGGGTATACCTGTATCTGAATATGGGGTTTTGGTTGATATGATCAGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGGGCTTGGCCCAAGACGCTGCTGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTCCCTACTGATTGCAGTGAATGTCCCATCTGCTTAGAAGAGTTCTACGTTGGGAACGAGGTCCGTGGCCTGCCTTGTGCTCACAATTTTCATGTTGCATGCATCGATGAGTGGCTGAGGCTGAATGTGAAATGTCCTCGGTGCCGTTGCTCTGTATTTCCAAATCTTGATCTTAGTGCTCTGTCCAATCTCCGTCCTGATTCGGAACGAACTTCTGCCAGTGTTGTGACAACAACCAGATATGTGAGAGGCCAACCCTCTAGTCAAAGTTACCGGTTAAGATTACATGGTCTTCTCCGTCCAGTTCGTGCTGAAATTGCTGGGCCCATTGGTGTCACAGACAATGCTTTAGAAGATGCCGAGAACGGTGTTATATCTGTTGTGACTAGAAGCACATCAAATGGAGACCAGATCTTGGCTGTTGAATGTATGCCTGTCAGTCATTCCTCTGCACAAAGTTAG 1143 0.4628 MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHSCTYPLHIWIVVDYTTVFIFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRVAVLSILALLLYPFLWAWTIIGTLWFSSAKNCLPEEGQKWGFLIWLLFSYCGLFCIACMSIGKWLTRRQALLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGLAQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVACIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDSERTSASVVTTTRYVRGQPSSQSYRLRLHGLLRPVRAEIAGPIGVTDNALEDAENGVISVVTRSTSNGDQILAVECMPVSHSSAQS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1627 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 IPR044793 GO:0004842|GO:0010182
Dod05g1627 380 Pfam Ring finger domain 234 276 IPR001841 -
Dod05g1627 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Dod05g1627 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Dod05g1627 380 SUPERFAMILY RING/U-box 217 284 - -
Dod05g1627 380 SMART ring_2 235 275 IPR001841 -
Dod05g1627 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 - -
Dod05g1627 380 CDD RING-H2_RNF111_like 234 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1627 Dod-Chr5 41387824 41393457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1627 58 360 C3H Transcription Factor Family AT3G47990 72.549 1.05e-158 446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1627 05 41387824 41393457 Dod09g0294 09 4512913 4515060 PCT