Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1613 ATGGCTGTCTCAGTGTGGAGAGCTCGTGCAGCAGCGTCCTCGATTCTTGCCAATATCGCTAATACTTGTTGCCGTTTTTCTTCCGATGTTGTTGCAAACACAAATCCTCATATTGCACGTGAGAGTATGATAAACCAAATGATGTATTCTGATATAAATTCACAAATTGGGAGCTGTATGCCGCTATCTTCTATGCGAATTGGAACTATCATTCACAACATTGAGCTGAACCCAGGGCAAGGTGGCAAGCTGGTCCGAGCAGCAGGAACAAGTGCAAAGATATTGAAAGAGCCCACATCCAGATACTGTCTAATTCAACTCCCTTCGGGTGTTAAAAAATTGATTGATTCTCGCTGCAGGGCCACCATTGGTACGGTGTCTAATCCAAGCCATGGAGATCAAAAACTTACGAAGGCTGGACATAGCCGATGGCTTGGTCGAAGACCAGTTGTTCGGGGAGTGGCCATGAATCCTGTAGATCATCCTCATGGTGGAGGAGAAGGTAAGAGCAAGAGTAGTGGGCGGTGGGGGCGAGGATCCCGTACTCCTTGGGGAAAGCCAACTAAGGGTGGCTACAAGACTGGACCCTTAAAGCGGAGAAGCGATTCTAGCATGGAGGAGAAGATGTCGAAGGCCTCATCGTTTTGTACATGCCAGAATGTTGCGCCATCGCTGTTGAACTACTTCGTCAATGTGTTTTGA 702 0.4758 MAVSVWRARAAASSILANIANTCCRFSSDVVANTNPHIARESMINQMMYSDINSQIGSCMPLSSMRIGTIIHNIELNPGQGGKLVRAAGTSAKILKEPTSRYCLIQLPSGVKKLIDSRCRATIGTVSNPSHGDQKLTKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGRWGRGSRTPWGKPTKGGYKTGPLKRRSDSSMEEKMSKASSFCTCQNVAPSLLNYFVNVF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1613 233 Pfam Ribosomal Proteins L2, C-terminal domain 56 185 IPR022669 GO:0003735|GO:0005840|GO:0006412
Dod05g1613 233 Gene3D - 50 126 IPR014722 -
Dod05g1613 233 TIGRFAM rplB_bact: ribosomal protein uL2 50 203 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Dod05g1613 233 Gene3D Ribosomal protein L2, domain 3 127 211 IPR014726 -
Dod05g1613 233 SUPERFAMILY Translation proteins SH3-like domain 56 199 IPR008991 -
Dod05g1613 233 ProSitePatterns Ribosomal protein L2 signature. 149 160 IPR022671 GO:0003735|GO:0005840|GO:0006412
Dod05g1613 233 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 20 203 - -
Dod05g1613 233 SMART Ribosomal_L2_C_2 54 187 IPR022669 GO:0003735|GO:0005840|GO:0006412
Dod05g1613 233 PANTHER RIBOSOMAL PROTEIN L2 20 203 IPR002171 GO:0003735|GO:0005840|GO:0006412
Dod05g1613 233 MobiDBLite consensus disorder prediction 156 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1613 Dod-Chr5 41224254 41227428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1613 17 166 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 38.994 2.10e-25 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1613 - - lang:109347761 288.885