Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1606 ATGGACCTTGGGACAAATCTCAGAGAAAACCGTGCATCACAGACAATGGATATGCAAGAAAACTACTTGAAAACAAGCATGAAAGATGATGATGACCTTCCTTTTGGGGATCCTTCCTCACAGGGTTTCATGCAAGATTTTCACGACACTGATCACTTTCCTCATATGAATTGCTCATCATCCAATAATGATCCATCATTGGGGGTCCAAACTCCAAATACTGACCCTTTTGACAATTTAACATGTGGGTGCTCACAGGGGGGTTTGGAGATTTATGAATGCAAGCATTTTGTTGACAATGATGGTAATGGGGGGCATGCTCATGTTATGGACAATTTCCAATATGAAGGCTATAGTTTGAATCTCCCAAGGAAAGATCAAATGGATGTGATGGTTGCAAACCAAAGTTATATGCCCTTTAATCCTATAGAAACCAAGCCTTTGAATTTCGTTGCCCCAGATGAAATCTCATGCATATCTCCAGCGAATTATTACAAAAGTGATGGAATGGATGAAGATAATAGGGCATCTCCAACCACTAGAAGGACATTCAAAGTTCCGAAGAAGCCCAATATGGTGAAGGGGCAATGGACAGTTGAAGAAGATAGATTGTTGATTCAGCTGGTGGAACAATATGGAGTGAGGAAGTGGTCCCACATCGCTCAAGCATTGCATGGAAGAATAGGGAAACAGTGCAGAGAGCGCTGGCATAACCATCTAAGGCCTGATATTAAGAAGGACATATGGACTGAAGAAGAGGATATGGTACTGATCCAAGCTCATGCAGAGTTAGGAAACAAATGGGCAGAGATTGCAAAAAGATTGCCAGGAAGAACTGAGAACTCAATCAAGAATCACTGGAATGCAACAAAGAGGAGGCAATATTCAAAAAGAAAATGCAGATCAAAGTACCCTAGAGGCTCTGCTCTGCAGGAATACATCAAGAGCTTGAACTTGGACCAGAATCCACCAATAGACTATAGAAAAAAATCTTCTGCTAATGCCAAGGTCATGACTAACAATAATAATAGTACAAGCAAAGCAGCAGCAGCATCAGCATCTCATGCCAATGACCAATTGGTGCCAAATTATGATAATTTTAATGAGGACCCGGATTTATGTTTCGGTGATAATATGTTTATTCAAGATCAGGGGTGTGGTATTGATTCTCTGCTAGATGATGTTCCTTGTGTTCCCACAATGGACAATGAGAAAGATTTTAATGGAAAGATGCAATGTGGTTGTGGTCCTAATGTGGGAGGAAAACAATGTGATCATGGAATGATGGCACCAATGGAGGGGGTTGAAGCTAACAAGGAGCTGGATTTGGTGGAGATGATCTCTGATGAATGA 1353 0.4117 MDLGTNLRENRASQTMDMQENYLKTSMKDDDDLPFGDPSSQGFMQDFHDTDHFPHMNCSSSNNDPSLGVQTPNTDPFDNLTCGCSQGGLEIYECKHFVDNDGNGGHAHVMDNFQYEGYSLNLPRKDQMDVMVANQSYMPFNPIETKPLNFVAPDEISCISPANYYKSDGMDEDNRASPTTRRTFKVPKKPNMVKGQWTVEEDRLLIQLVEQYGVRKWSHIAQALHGRIGKQCRERWHNHLRPDIKKDIWTEEEDMVLIQAHAELGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSALQEYIKSLNLDQNPPIDYRKKSSANAKVMTNNNNSTSKAAAASASHANDQLVPNYDNFNEDPDLCFGDNMFIQDQGCGIDSLLDDVPCVPTMDNEKDFNGKMQCGCGPNVGGKQCDHGMMAPMEGVEANKELDLVEMISDE* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1606 450 Pfam Myb-like DNA-binding domain 249 288 IPR001005 -
Dod05g1606 450 CDD SANT 249 291 IPR001005 -
Dod05g1606 450 SUPERFAMILY Homeodomain-like 191 287 IPR009057 -
Dod05g1606 450 ProSiteProfiles Myb-like domain profile. 241 291 IPR001005 -
Dod05g1606 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 245 295 IPR017930 -
Dod05g1606 450 SMART sant 245 293 IPR001005 -
Dod05g1606 450 SMART sant 193 242 IPR001005 -
Dod05g1606 450 Gene3D - 248 310 - -
Dod05g1606 450 PANTHER MYB PROTEIN-RELATED 125 320 - -
Dod05g1606 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 244 IPR017930 -
Dod05g1606 450 ProSiteProfiles Myb-like domain profile. 189 240 IPR001005 -
Dod05g1606 450 Gene3D - 193 246 - -
Dod05g1606 450 Pfam Myb-like DNA-binding domain 197 246 - -
Dod05g1606 450 CDD SANT 197 240 IPR001005 -
Dod05g1606 450 PANTHER BNAC07G50190D PROTEIN 125 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1606 Dod-Chr5 41169468 41171379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1606 65 396 MYB Transcription Factor Family AT4G18770 49.036 1.33e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod05g1606 Myb_DNA-bind_6 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1606 K09422 - gmx:100816653 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1606 05 41169468 41171379 Dod09g0269 09 3986303 3988173 PCT