Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1580 ATGGCATCATCCAGCTCTTACAATTCTCCCTGCGCTGCCTGCAAATTCTTGAGGAGGAAATGCATGCCAGGGTGCATCTTTGCGCCTTACTTCCCACCCGAAGAGCCTCAAAAGTTCGCCAACGTGCACAAGATCTTCGGTGCTAGCAACGTGACCAAGCTCCTCAACGAACTCCTCCCTCACCAGAGGGAAGATGCAGTGAATTCCCTTGCGTATGAGGCAGAGGCACGGGTGAGGGACCCAGTTTATGGCTGCGTTGGTGCCATCTCTTTCCTTCAGAGACAGGTCCAGAGGCTCCAGAAGGATCTTGATGCCGCCAACGCCGATCTGCTCCGCTATTCCTTCGGGGAAATCCCTCCTGCAGCACCTCTTTCTGTGCCTCCTGCGCTCGCCAATTCACTTCAACAAATTCCCCAGAGACAATTCAGTGCAAGAGTTGGCAATGATGGAAGTGCGTTTTATCGCCAGTCTCCTGCTGCGTTTTCTTTCCCTTATTCTCTTCCTTGGACTGATGCCTCTTCTGAGGACATAAGTGAGGGAGGAGGTGTAGGAGGAGGAGGTAATTTGTGA 570 0.5263 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKDLDAANADLLRYSFGEIPPAAPLSVPPALANSLQQIPQRQFSARVGNDGSAFYRQSPAAFSFPYSLPWTDASSEDISEGGGVGGGGNL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1580 189 Coils Coil 89 109 - -
Dod05g1580 189 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Dod05g1580 189 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Dod05g1580 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 181 - -
Dod05g1580 189 PANTHER ELONGATED PETIOLULE 1 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1580 Dod-Chr5 40836373 40836942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1580 2 126 AS2 family AT5G63090 85.600 1.57e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod05g1580 LOB 6.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1580 - - gmx:100803667 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1580 05 40836373 40836942 Dod05g1580 05 40836373 40836942 ECH
Dod05g1580 05 40836373 40836942 Dod09g0246 09 3669044 3671774 PCT