Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1576 ATGGGTCGCCATTCCTGCTGTGTAAAGCAAAAGCTGAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTATTCAATCACATAACCAGGTTTGGTGTTGGGTGCTGGAGCTCGGTTCCAAAACTAGCCGGACTGCAGAGGTGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGGCCTGATTTGAAGAGAGGGATGTTCTCTCAGCAGGAGGAGGATCTTATCATCAGTCTTCATGAAGTCCTTGGAAATAGGTGGGCTCAGATTGCTGCACAGTTACCAGGGAGAACGGATAATGAGATCAAGAACTTCTGGAATTCATGCTTGAAGAAGAAGCTATTGAAGCAAGGGATTGACCCAGCTACACACAAGCCCCTATCAGAAGCTCATGTGGTGAAGGAAGATAAGAAAAGCACAGAGACAGTACCCCCTTTGCAAATACCATTCTCTAATCATCAAGGGTCTTCTGCTGCAGCTACATCAACCTTAGCCTCCTCACAGGGGTCATCAGCACTTCTGATAAGCGATTCAAGTTACTATGATGGAGGGATAGCAGAGGCTTCTAGAGAGATTTTCATGACCAATAAGCCAGCATTGGACCCTTTATCCTTCTATGATTTCCAAATGGGTGGTGTTGCTGAGCCTAGTTTTCAATTACCTGTGAGTCATCATCAGCAATATCACAGTACAGGCCTTAAACCTTTTGATCAGAACCAGTTTGGAACAAATTCAACAAGCTATGGATTCTCTTCAATGCCAAGCCTAACCAATTCGGATCACGGGCACGTGCCGGTGACAGAGTTCTCAGACAACAACTCAGCCTCCAAGATCGGCTCCTCCAGCTGCTTGTTTATGAACAATGACCAGGTGAAGGAATGTTCAAGCAATAGCTCAAACATGAGCAATATTAATTATCCAGGAGGAGGAGGGTGCCATCAGATGATGGAGAATGCAGGGTTCTCATCATCATGGGACGGTGACAACAAATTGGACCCTTTGTTTCAGTTCCAAGTGAATGCAATAAAATCCGAGGATTTCGCAAACTATCCCTTGATGTCACTGTCAGAAGATCTAACAGGAGCAAATTTTGATGTATTCCAGCATATATGA 1119 0.4468 MGRHSCCVKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPATHKPLSEAHVVKEDKKSTETVPPLQIPFSNHQGSSAAATSTLASSQGSSALLISDSSYYDGGIAEASREIFMTNKPALDPLSFYDFQMGGVAEPSFQLPVSHHQQYHSTGLKPFDQNQFGTNSTSYGFSSMPSLTNSDHGHVPVTEFSDNNSASKIGSSSCLFMNNDQVKECSSNSSNMSNINYPGGGGCHQMMENAGFSSSWDGDNKLDPLFQFQVNAIKSEDFANYPLMSLSEDLTGANFDVFQHI* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1576 372 CDD SANT 70 109 IPR001005 -
Dod05g1576 372 CDD SANT 17 61 IPR001005 -
Dod05g1576 372 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod05g1576 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod05g1576 372 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Dod05g1576 372 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod05g1576 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod05g1576 372 Gene3D - 69 144 - -
Dod05g1576 372 PANTHER MYB DOMAIN PROTEIN 55 1 368 - -
Dod05g1576 372 Gene3D - 11 67 - -
Dod05g1576 372 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dod05g1576 372 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod05g1576 372 SMART sant 66 114 IPR001005 -
Dod05g1576 372 SMART sant 13 63 IPR001005 -
Dod05g1576 372 PANTHER MYB TRANSCRIPTION FACTOR 1 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1576 Dod-Chr5 40735900 40737687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1576 1 139 MYB Transcription Factor Family AT4G01680 80.576 1.00e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod05g1576 Myb_DNA-binding 7.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1576 K09422 - gmx:100811140 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1576 05 40735900 40737687 Dod09g0240 09 3566293 3568119 PCT