Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1572 ATGAACCCCTACGACAACAGATACACCGACGCCGCATCTTATCGCCACCGTCGCAGTGATCTCGTAGGATCTATGCCGCCGCCTCCCGCTGTCGGCCGCGGCGGTCCGGTCCGGTACGGCGCCCCTCCGGTTCCTTACGGCGTTCTCGGAGCTGGAAGAGGAGCTCCGAACTCCTTCGGATCCGCACCTGTTGCCACGGTTCCTCCATTCATTCCTCCTTCCGGAGGCTTCAATTTAGGCCGGGGCGGTGGTTTTGGTGGCGGTAGACCCGGTGCCGGCCGTGCCGGTGACAGAAAAGACGACACAGGTCGTCCTGGTGGTGGTGGAAGAGGTCGAGGGGGAACCGGTAGGGGCGGTGGAACCGGTTTCCGGGGAGGAAGAAGTCACGGTGGATCTGGCGGTGGAAGAGGAGGAGGTAGACATGGTGGTGGGTCATCATCTAAGGATGATTTGAACAGGGTTGCTCTACCGAAACAGGATTTCAGGAATTTGGTCCCTTTCGAGAAGAATTTCTACGTTGAGAGCCTTGCGGTTCGGGCCATGTCTGATCACGAAGTCATGCATTATCGTGCAAGTAGAGAGATCACGGTGCAAGGCCAGGATGTGCCGAAACCTATTCGGATGTTTCATGAGGCTAATTTTCCTGATTACTGCCTTGAGGTGATCGCCAAATTGGGTTTTGTTGAGCCGACTCCAATCCAGGCTCAGGGTTGGCCCATGGCTCTCAAGGGTAGAGACTTGATTGGCATTGCTGAGACTGGCTCTGGCAAAACTTTGGCATATCTGCTTCCTGCTTTAGTGCATGTCAGTGCACAACCTCGATTGGTACAAGGGGAAGGTCCCGTTGTCTTAGTTTTAGCACCAACTAGGGAGTTAGCTGTTCAAATTCAGGAAGAAGCTCTGAAATTTGGGTCACGGGTATATATTAGAAGTACATGCATCTATGGTGGTGCACCAAAGGGGCCTCAAATTCGTGACCTTAAAAGGGGTGTTGAGATTGTTATTGCTACACCTGGTCGCCTAATAGATATGTTGGAAGCTCAGCACACAAACTTGCAGAGAGTGACTTACCTTGTCTTGGATGAAGCTGATCGTATGTTGGACATGGGTTTTGAACCTCAGATACGGAAAATAATCGGCCAGATTCGACCAGATAGACAGACATTATATTGGAGTGCTACGTGGCCAAGGGAGGTTGAAGCTTTGGCAAGGCAGTTTTTGCGCAACCCATATAAGGTAATTGTTGGGTCACCAGAACTGAAAGCAAACCAATCTATAAATCAAGTTGTTGAAGTTGTAACAGATGTGGAGAAATATAATAGATTGATCAGACTTCTGAAAGAAGTGATGAATGGGAGCCGAATTCTAATATTTGTGGAGACAAAAAAGGGATGTGATCAAGTTACAAGACAATTGAGAATGGATGGATGGCCAGCACTATCCATCCATGGTGATAAGACTCAGGCTGAAAGGGACTGGGTCTTGGCTGAATTTAAGAGTGGCAAAAGTCCGATTATGACTGCCACTGATGTTGCTGCACGGGGTCTTGGTAGGATCACTGTGTATTAA 1569 0.499 MNPYDNRYTDAASYRHRRSDLVGSMPPPPAVGRGGPVRYGAPPVPYGVLGAGRGAPNSFGSAPVATVPPFIPPSGGFNLGRGGGFGGGRPGAGRAGDRKDDTGRPGGGGRGRGGTGRGGGTGFRGGRSHGGSGGGRGGGRHGGGSSSKDDLNRVALPKQDFRNLVPFEKNFYVESLAVRAMSDHEVMHYRASREITVQGQDVPKPIRMFHEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLVQGEGPVVLVLAPTRELAVQIQEEALKFGSRVYIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLYWSATWPREVEALARQFLRNPYKVIVGSPELKANQSINQVVEVVTDVEKYNRLIRLLKEVMNGSRILIFVETKKGCDQVTRQLRMDGWPALSIHGDKTQAERDWVLAEFKSGKSPIMTATDVAARGLGRITVY* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1572 522 CDD DEADc_DDX5_DDX17 219 413 - -
Dod05g1572 522 MobiDBLite consensus disorder prediction 76 151 - -
Dod05g1572 522 Gene3D - 414 517 IPR027417 -
Dod05g1572 522 Pfam DEAD/DEAH box helicase 231 401 IPR011545 GO:0003676|GO:0005524
Dod05g1572 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 415 IPR027417 -
Dod05g1572 522 Gene3D - 170 413 IPR027417 -
Dod05g1572 522 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 359 367 IPR000629 -
Dod05g1572 522 SMART ultradead3 226 429 IPR014001 -
Dod05g1572 522 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 85 516 - -
Dod05g1572 522 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 238 413 IPR014001 -
Dod05g1572 522 PANTHER LD32873P 85 516 - -
Dod05g1572 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 516 IPR027417 -
Dod05g1572 522 Pfam Helicase conserved C-terminal domain 437 516 IPR001650 -
Dod05g1572 522 MobiDBLite consensus disorder prediction 1 53 - -
Dod05g1572 522 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 207 235 IPR014014 GO:0003724
Dod05g1572 522 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 441 522 IPR001650 -
Dod05g1572 522 CDD SF2_C_DEAD 426 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1572 Dod-Chr5 40687765 40693105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1572 194 516 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 1.43e-50 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1572 K12823 - gmx:100817092 728.013