LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod05g1571	ATGGCAGATGAGGATCACACCCCAACAGAAGCAAAGGATTACTATTCAAAATCAAGATGGTGGTCAGAGACTGAGCAGGCACTAGGGGATCCCAAGAGAAGTAGTAGAAATGGAGTCGATGGCTTCTATTATGGTGCTGGCAGAGATTGCTATGGCTATAACTCCCAAGAGATAGTGACTCCTGAAATTACTGTGTCCTGTCATTCATTTGAAGCAACAAAAAATTTGACTAGTACCGGAATTTCTGAGACAAATGAAGAAAATTACGAAGGTGTAACTAGTGCCAGAAATGGAGTTAACGAAATCTTCGAGGCCAGTGGCGAAGAAAACGGTGACTATGGCTACTATTCCAGACAAATATTGTCAGAAGAAATTGTGGAGATAGTTGAGGATGGCAAGAGCATAACAAGCAACAAAGATAGAAGAGATGATGACCTTTATGTGGCTGTTGGCAAAGATGACTTGGATGTGTTGCAATGGGCCCTTGATCATGCAGTTCCTCCGGGTTCCCGGATCTTTCTTGTCCATGTCTCTCCTCCAATTACAATGATTCCTACGCCAGTTGGAAAGTTTGAAAGAAGCCAATTGACCCCGCAACAAGTGAGACTCTACGTGAATGAAGAGAACAACAAGAGGAAGGATCTTCTGCAGAAGTACATCCAGCTGATCACTGAAGCCAAGGTAACTGCAGAAACGTTGCTGCTGGAGAGCAATGACACAGGAAAAGCCATTCTGGATCTCATCTCTATACTTAACATAACCAACATTATCATCGGAATAAAAAAGCTACCCTACTCACGGCGCAATAACAAATTAAGCAAAGGAGAGTTTGTAAAGAAAAATGCACCAAAGTCCTGTGAAGTTACCTTGGTTTATAATGGTGAGGAGTTTGTGTCTACCCCTTCCATGGATCGCTTGGCATCTAACGGTCTAGGATCCCAAAGCAAAGGTCACTCAAAAAGCAACTTCCTTCATTGTGTGTGCTTGTCAGGGTGCGTGAGAGATTAA	1008	0.4306	MADEDHTPTEAKDYYSKSRWWSETEQALGDPKRSSRNGVDGFYYGAGRDCYGYNSQEIVTPEITVSCHSFEATKNLTSTGISETNEENYEGVTSARNGVNEIFEASGEENGDYGYYSRQILSEEIVEIVEDGKSITSNKDRRDDDLYVAVGKDDLDVLQWALDHAVPPGSRIFLVHVSPPITMIPTPVGKFERSQLTPQQVRLYVNEENNKRKDLLQKYIQLITEAKVTAETLLLESNDTGKAILDLISILNITNIIIGIKKLPYSRRNNKLSKGEFVKKNAPKSCEVTLVYNGEEFVSTPSMDRLASNGLGSQSKGHSKSNFLHCVCLSGCVRD*	336

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod05g1571	335	Gene3D	HUPs	148	275	IPR014729	-
	Dod05g1571	335	Coils	Coil	205	225	-	-
	Dod05g1571	335	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE	105	334	-	-
	Dod05g1571	335	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE	105	334	-	-
	Dod05g1571	335	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	154	268	-	-
	Dod05g1571	335	CDD	STK_N	147	294	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod05g1571	Dod-Chr5	40680714	40684664	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod05g1571	143	294	U-box Gene Family	AT2G45910	31.013	5.37e-15	74.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod05g1571	-		-	pvu:PHAVU_003G204300g	432.18