Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1561 ATGGACGCTGTCGACAGTTACATTCCCATCCCTCAGCGGCAAACTGATCTTCCTTTCCTTCTCGCAATTGAAGATGTTTTCTCCATCACTGGTCGTGGTACTGTTGCGACTGGTAGGGTTGAGAGAGGGACTATTAAGGTTGGTGACACTGTTGATATTGTTGGCGTTAAGGAGACTAGGAACACTACTGTTACTGGTGTTGAGATGTTCCAGAAGATTCTGGATGAGGCTATGGCTGGTGATAATGTTGGGCTGTTGCTTAGGGGTATTCAGAAGATTGATATTCAGAGAGGGATGGTGTTGGCTAAGCCTGGGAGTATTACACCTCATACTAAGTTTGCTGCTATTGTTTATGTTTTGAAGAAGGAGGAAGGTGGGAGGCACTCGCCGTTCTTCGCTGGTTACCGGCCGCAGTTCTACATGAGGACCACTGATGTCACTGGGAAGGTGACTCAGATTATGAATGATAAGGATGAGGAGTCCAAGATGGTGATGCCTGGTGACAGGGTTAAGATGGTTGTTGAGCTTATTGTCCCTGTGGCTTGTGAGCAAGGGATGAGGTTTGCTATTAGGGAAGGAGGGAAGACTGTTGGTGCTGGTGTCATCCAATCCATCATTGAGTGA 624 0.4728 MDAVDSYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIKVGDTVDIVGVKETRNTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKIDIQRGMVLAKPGSITPHTKFAAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTQIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1561 207 CDD EFTU_III 108 202 - -
Dod05g1561 207 SUPERFAMILY Translation proteins 13 109 IPR009000 -
Dod05g1561 207 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 106 206 IPR009001 -
Dod05g1561 207 Pfam Elongation factor Tu domain 2 33 101 IPR004161 GO:0005525
Dod05g1561 207 Gene3D Translation factors 14 142 - -
Dod05g1561 207 PANTHER ELONGATION FACTOR TU 1 207 - -
Dod05g1561 207 Pfam Elongation factor Tu C-terminal domain 106 205 IPR004160 -
Dod05g1561 207 Gene3D Translation factors 146 206 - -
Dod05g1561 207 PANTHER ELONGATION FACTOR TU-RELATED 1 207 - -
Dod05g1561 207 CDD EFTU_II 19 105 IPR033720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1561 Dod-Chr5 40554955 40555578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1561 1 205 Eukaryotic Initiation Factors Gene Family AT5G60390 30.769 4.59e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1561 K02358 - rcu:8278277 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1561 05 40554955 40555578 Dod09g0226 09 3396899 3399241 PCT