Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1560 ATGGCAATTTCTTCAGCAGCAGCAGCAGCAGCCTCAAAACTCATCTACCCACGTGCCCCTCCTTCTTCTTCCTCTCCCTCTCCCTCCTCAGCCCCTTCTTCCCTCTTCCTCAAAACTCACACAACAACAACAACAACAACCACAACCCACCTCTCCTCCTCCTTCCTCAACCCCTCCACAATCCTCCACCTAACCCCATCCTCCTCCACCTCCCACCACCGCCGCTCCCTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTCAACATCGGCACAATTGGCCACGTCGACCACGGCAAGACCACCCTCACCGCCGCCCTCACAATGGCCCTCGCCGCCCTCGGCAACAGCGCCCCCAAAAAATACGACGAGATCGACGCCGCCCCCGAAGAACGTGCCCGCGGCATCACAATCAACACCGCCACCGTCGAGTACGAAACAGAAAACCGCCACTACGCCCACGTTGACTGCCCAGGCCACGCCGACTACGTCAAGAACATGATCACCGGAGCCGCCCAAATGGACGGCGCCATCCTCGTCGTCTCGGGCGCCGACGGCCCCATGCCCCAAACGAAAGAACACATCCTCCTCGCTAAACAGGTCGGTGTCCCAAACATGGTCGTCTTCCTCAACAAGCAAGACCAAGTCGACGACGAGGAGCTTCTCCAGCTCGTCGAACTCGAGGTCCGCGAGCTTCTAACCTCGTACGAGTTCCCCGGCGACGATGTCCCCATCATCTCGGTTCCGCTCTCCTCGCTCTCGAAGCCCTAA 786 0.6056 MAISSAAAAAASKLIYPRAPPSSSSPSPSSAPSSLFLKTHTTTTTTTTTHLSSSFLNPSTILHLTPSSSTSHHRRSLTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLTSYEFPGDDVPIISVPLSSLSKP* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1560 261 PANTHER ELONGATION FACTOR TU-RELATED 36 253 - -
Dod05g1560 261 Gene3D - 81 260 IPR027417 -
Dod05g1560 261 TIGRFAM small_GTP: small GTP-binding protein domain 93 226 IPR005225 GO:0005525
Dod05g1560 261 PANTHER ELONGATION FACTOR TU, CHLOROPLASTIC 36 253 - -
Dod05g1560 261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 252 IPR027417 -
Dod05g1560 261 PRINTS GTP-binding elongation factor signature 94 107 IPR000795 GO:0003924|GO:0005525
Dod05g1560 261 PRINTS GTP-binding elongation factor signature 174 185 IPR000795 GO:0003924|GO:0005525
Dod05g1560 261 PRINTS GTP-binding elongation factor signature 158 168 IPR000795 GO:0003924|GO:0005525
Dod05g1560 261 PRINTS GTP-binding elongation factor signature 138 146 IPR000795 GO:0003924|GO:0005525
Dod05g1560 261 PRINTS GTP-binding elongation factor signature 211 220 IPR000795 GO:0003924|GO:0005525
Dod05g1560 261 Pfam Elongation factor Tu GTP binding domain 90 251 IPR000795 GO:0003924|GO:0005525
Dod05g1560 261 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 90 261 IPR000795 GO:0003924|GO:0005525
Dod05g1560 261 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 131 146 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1560 Dod-Chr5 40553929 40554895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1560 20 258 Eukaryotic Initiation Factors Gene Family AT5G10630 29.545 1.58e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1560 K02358 - jre:108984280 343.584