Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1554 ATGGGTGAAGGAACTTTTGGACAAGTCTTAGAATGCTGGGACCGAGAAAGGAAGGAAATGGTTGCCATAAAGATCGTCCGTGGGGTAAAGAAGTATCGAGAAGCAGCCATGATAGAAATTGAGGTACTGCAACAGCTTGGCAAACATGATAAAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCATTTATGCATGATTTGTGCATGATCCATACTGACCTGAAGCCTGAAAACATACTTCTAGTTTCACCCGAGTATGTCAAAGTTCCTGATTACAAGAGTTCATCCAGATCACCAAGTTCCTATTTCAAGAGAGTGCCCAAGTCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACCACTTATCAGCGAGAAGATCAGAATTACATTGTATCAACTCGTCACTATAGGGCACCTGAAGTTATCCTTGGACTTGGCTGGAGTTATCCATGTGATGTATGGAGTGTGGGATGTATATTGGTTGAGCTGTGCACGGGTGAAGCTTTGTTTCAGACTCATGAGAATTTAGAGCACCTCGCCATGATGGAGAGGGTGCTTGGTCCATTACCTCAGCACATGGTGAAGAGAGTTGACCGACATGCTGAGAAGTATGTTAGAAGGGGCCGATTGGACTGGCCAGAGGGTGCCACCTCGAGGGAGAGTATTAAGCTTGTAATGAAGCTTCCTAGGCTACAGAACCTTATAATGCAGCACGTCGATCATTCAGCTGGTGATCTTATACATCTCTTGCAGGGATTACTCAGATATGACCCCTCTGAAAGGCTTACGGCCAAGGAAGCTCTAAGACATTCTTTCTTTATGAGAGATCCTCGCCTTAGGAGATGA 987 0.4387 MGEGTFGQVLECWDRERKEMVAIKIVRGVKKYREAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECVAFMHDLCMIHTDLKPENILLVSPEYVKVPDYKSSSRSPSSYFKRVPKSSAIKVIDFGSTTYQREDQNYIVSTRHYRAPEVILGLGWSYPCDVWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMVKRVDRHAEKYVRRGRLDWPEGATSRESIKLVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPSERLTAKEALRHSFFMRDPRLRR* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1554 328 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 327 - -
Dod05g1554 328 Gene3D Transferase(Phosphotransferase) domain 1 49 320 - -
Dod05g1554 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Dod05g1554 328 SMART serkin_6 2 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod05g1554 328 Pfam Protein kinase domain 1 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod05g1554 328 PANTHER KINASE AFC1 1 327 - -
Dod05g1554 328 Gene3D Phosphorylase Kinase; domain 1 1 75 - -
Dod05g1554 328 SUPERFAMILY Protein kinase-like (PK-like) 2 323 IPR011009 -
Dod05g1554 328 CDD PKc_CLK 1 320 - -
Dod05g1554 328 ProSiteProfiles Protein kinase domain profile. 1 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1554 Dod-Chr5 40459199 40462647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1554 1 320 Core Cell Cycle Gene Families AT1G76540 25.749 5.13e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Dod05g1554 Pkinase 5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1554 K08287 - gmx:100804452 644.81