Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1544 ATGGCGACCATGCCTTTGTTCAAGTCCCTTACAATGTCAGAATCATCATGCATACTCTCTCTGCCCTCACTCTTCTCCCACACCAAAACCAAGCAACCATTTCTCTCTAAGCCACTCAAATTCCAAGTGGCGTGCTGCAACTCTTCACTGTTTCCACCCTCTTTTCCCCTCATAATGAAAACCACCCACCATTCCCCTGTGCTCACATTTGTGGCACGGACATCAGATTGGGCTCAACAACAAGATGAAGAAGAAGAAGGTGAAGCATCATGGGAGAACCAAGAAGCACCCACATGGGAAAACCAAGATGATGATGATGATGAAACTGAAGCTGTGATAGAAGATAGCGAGGGAGAAGGGGAAGGTGATTTTGAAGAAACATCCGAGGATGCAAAGATCTTTGTTGGGAACTTGCCTTTTGATGTTGACAGCCAGAAGCTTGCCATGCTTTTTGAACAGGCTGGGACTGTGGAGATTGCTGAGGTGATTTATAATAGGGCCACTGATAGAAGTCGCGGGTTTGGATTTGTGACCATGAGTACTGTTGAAGAAGCTGACAAGGCTGTGGAGAAGTTCAGTGGCTATGATCTAGATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAGAGGAGCACAGCCTGAGCGCCCACCTACGCACCTTTGA 666 0.47 MATMPLFKSLTMSESSCILSLPSLFSHTKTKQPFLSKPLKFQVACCNSSLFPPSFPLIMKTTHHSPVLTFVARTSDWAQQQDEEEEGEASWENQEAPTWENQDDDDDETEAVIEDSEGEGEGDFEETSEDAKIFVGNLPFDVDSQKLAMLFEQAGTVEIAEVIYNRATDRSRGFGFVTMSTVEEADKAVEKFSGYDLDGRVLTVNKAAPRGAQPERPPTHL* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1544 221 SMART rrm1_1 132 205 IPR000504 GO:0003723
Dod05g1544 221 SUPERFAMILY RNA-binding domain, RBD 128 216 IPR035979 GO:0003676
Dod05g1544 221 MobiDBLite consensus disorder prediction 98 126 - -
Dod05g1544 221 PANTHER OS02G0815200 PROTEIN 5 219 - -
Dod05g1544 221 MobiDBLite consensus disorder prediction 77 128 - -
Dod05g1544 221 CDD RRM_HP0827_like 132 209 - -
Dod05g1544 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Dod05g1544 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 202 IPR000504 GO:0003723
Dod05g1544 221 Gene3D - 71 217 IPR012677 -
Dod05g1544 221 PANTHER RIBONUCLEOPROTEIN 5 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1544 Dod-Chr5 40367053 40370627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1544 120 210 Eukaryotic Initiation Factors Gene Family AT5G06000 32.967 6.21e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1544 - - gmx:100804984 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1544 05 40367053 40370627 Dod05g1544 05 40367053 40370627 ECH
Dod05g1544 05 40367053 40370627 Dod09g0209 09 2866582 2868942 PCT