Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1536 ATGACAACCACTTCACTCTCTTCCCTCCTCTTGCTCTTCTCTCTCCTCCTCACCTCAACCCTCATTTCCTCCTCACCTGTCCAGGACCCAGAATTTGTCACACAAGAGGTAAACAGGAAAATCAATGCCTCTTTGGCTAGGAGGAACTTGGGGTACCTCTCATGTGGGACAGGCAACCCCATTGACGATTGCTGGAGGTGTGACCCCAACTGGGAGAAGAACCGTCAGAGGCTAGCAGATTGTGCAATTGGGTTTGGCAAGAACGCCATTGGTGGAAGAGACGGTCAAATCTACGTTGTCACCGACTCCGGTGACGACGATCCGGTGAAACCAAAACCAGGCACACTCCGTTACGCCGTGATTCAGGATGAGCCCTTGTGGATCATATTCGCAAGGGACATGGTGATCCAGCTTAAGGAAGAGCTCATCATGAACTCTTTCAAGACCATCGACGGTAGAGGCGCCAGCGTGCACATTGCTGGTGGTCCATGCATTACAATACAGTATGTGACGAATGTTATAGTCCATGGGATAAATATACATGATTGTAAGCAAGGTGGGAATGCTATGGTGAGGGACTCCCCTAGGCACTATGGGTGGAGGACCGTATCGGACGGTGATGGTGTGTCCATCTTCGGAGGGAGCCACATTTGGGTGGACCATTGCTCCTTGTCTAACTGCAATGATGGGTTGATCGATGCCATCCATGGGTCCAACGCAATTACCATCTCCAACAATTACATGACACACCATGATAAGGTCATGTTGTTGGGTCATAGTGACACATACACCCAAGACAAGAACATGCAGGTCACCATTGCCTTTAACCACTTTGGAGAAGGACTTGTTCAGAGGATGCCAAGGTGTAGGCATGGGTATTTCCATGTGGTCAACAATGACTACACTCACTGGGAAATGTATGCCATTGGGGGAAGTGCTAACCCTACCATCAATAGCCAAGGCAACAGATTTGTTGCACCAGATAACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAATGGAAGGGTTGGAACTGGAGGTCAGAAGGGGACTTGTTGGTGAATGGTGCATTTTTCACAGCATCAGGTGCTGGAGCCTCCTCAAGCTATGCAAGGGCTTCAAGCTTAAGCGCAAGGCCATCTTCCCTTGTGGGTTCCATAACAACTAGTGCTGGTGCACTCACCTGTAAGAAGGGTTCCCGTTGCTGA 1224 0.4959 MTTTSLSSLLLLFSLLLTSTLISSSPVQDPEFVTQEVNRKINASLARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRDGQIYVVTDSGDDDPVKPKPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIVHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSNAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDNRFSKEVTKHEDAPESEWKGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTSAGALTCKKGSRC* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1536 407 SMART amb_all 133 330 IPR002022 -
Dod05g1536 407 PANTHER PECTATE LYASE 18-RELATED 1 404 IPR045032 GO:0030570
Dod05g1536 407 Pfam Pectate lyase 142 324 IPR002022 -
Dod05g1536 407 PANTHER PECTATE LYASE 1 404 - -
Dod05g1536 407 SUPERFAMILY Pectin lyase-like 37 401 IPR011050 -
Dod05g1536 407 Gene3D - 58 400 IPR012334 -
Dod05g1536 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Dod05g1536 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Dod05g1536 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Dod05g1536 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Dod05g1536 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Dod05g1536 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Dod05g1536 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Dod05g1536 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1536 Dod-Chr5 40277350 40280008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1536 1 407 Polysaccharide Lyase AT5G63180 80.929 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1536 K01728 - gmx:100101868 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1536 05 40277350 40280008 Dod05g1536 05 40277350 40280008 ECH
Dod05g1536 05 40277350 40280008 Dod09g0197 09 2737889 2741193 PCT